ncbi / pm4ngsLinks
Project Manager for NGS data analysis
☆30Updated last month
Alternatives and similar repositories for pm4ngs
Users that are interested in pm4ngs are comparing it to the libraries listed below
Sorting:
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 2 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 3 months ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- An interactive web-tool for RNA-seq analysis☆69Updated 8 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated 3 weeks ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆61Updated 4 months ago
- ☆27Updated 10 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- gatk4 RNA variant calling pipeline☆54Updated last week
- ☆39Updated 3 months ago
- Universal RObust Peak Annotator☆16Updated last year
- Python package to annotate and visualize gene fusions.☆64Updated last year