NCBI C++ Toolkit package sources
☆98Jun 28, 2026Updated this week
Alternatives and similar repositories for ncbi-cxx-toolkit-public
Users that are interested in ncbi-cxx-toolkit-public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Incremental building of phylogenetic distance trees☆33Jun 18, 2026Updated last week
- ☆17Jun 17, 2026Updated last week
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆32Feb 18, 2022Updated 4 years ago
- ANI based satellite annotation☆26Jun 9, 2026Updated 3 weeks ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆112Apr 23, 2026Updated 2 months ago
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 5 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- a python package for finding tandem repeats from genomic sequences☆34Jun 11, 2026Updated 2 weeks ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated 10 months ago
- A collection of command line tools for working with sequencing data☆52Jun 23, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 3 years ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Jun 8, 2022Updated 4 years ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆47Sep 20, 2020Updated 5 years ago
- Livermore Metagenomic Analysis Toolkit☆15Nov 15, 2020Updated 5 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Apr 22, 2026Updated 2 months ago
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆33Mar 27, 2018Updated 8 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 11 months ago
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Five implementations of double linked lists to demonstrate generic data structures in C☆19Dec 19, 2019Updated 6 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Jan 22, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated 11 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated 3 weeks ago
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 6 months ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago