NCBI C++ Toolkit package sources
☆101Sep 1, 2026Updated this week
Alternatives and similar repositories for ncbi-cxx-toolkit-public
Users that are interested in ncbi-cxx-toolkit-public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- client app for the gRPC health-checking protocol☆126Jan 31, 2020Updated 6 years ago
- ☆17Aug 13, 2026Updated 2 weeks ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆32Feb 18, 2022Updated 4 years ago
- ☆113Apr 23, 2026Updated 4 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated last month
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 6 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- Incremental building of phylogenetic distance trees☆35Updated this week
- Livermore Metagenomic Analysis Toolkit☆15Nov 15, 2020Updated 5 years ago
- Log monitoring and gathering infrastructure to feed analytics☆15Jul 28, 2026Updated last month
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of command line tools for working with sequencing data☆52Updated this week
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Jun 8, 2022Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆47Sep 20, 2020Updated 5 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Updated this week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆57Jul 24, 2025Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Jun 6, 2023Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆34Mar 27, 2018Updated 8 years ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated last year
- Five implementations of double linked lists to demonstrate generic data structures in C☆19Dec 19, 2019Updated 6 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Next-Generation Sequencing (NGS) Data Processing Tool & Library☆10May 9, 2023Updated 3 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆65Jan 22, 2026Updated 7 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- ☆18Apr 26, 2026Updated 4 months ago
- a python package for finding tandem repeats from genomic sequences☆39Jun 11, 2026Updated 2 months ago