seqan / sharg-parser
The modern argument parser for c++ tools
☆11Updated 3 weeks ago
Alternatives and similar repositories for sharg-parser:
Users that are interested in sharg-parser are comparing it to the libraries listed below
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated last week
- Histosketching Using Little Kmers☆56Updated last year
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆52Updated this week
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Library for the Handle Graph abstraction☆23Updated last month
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Bidirectional WFA (Paper)☆46Updated 11 months ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- ☆36Updated last week
- Fast interval intersection library☆41Updated last month
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Useful scripts and tools related to alevin-fry☆9Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆109Updated 6 months ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 3 months ago
- ☆26Updated 2 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- pipeline for the analysis of small RNA data☆14Updated 5 years ago
- ☆62Updated last month
- Self-contained, multi-threaded fasta/q parser☆43Updated 6 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 weeks ago
- Substring index for paths in a graph☆60Updated last week
- micro-read Fast Alignment Search Tool☆19Updated 5 years ago
- Long-read splice alignment with high accuracy☆62Updated 7 months ago
- A C library for handling bigWig files☆79Updated 3 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year