seqan / sharg-parserLinks
The modern argument parser for c++ tools
☆12Updated this week
Alternatives and similar repositories for sharg-parser
Users that are interested in sharg-parser are comparing it to the libraries listed below
Sorting:
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆29Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆38Updated 5 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- Fast interval intersection library☆44Updated 4 months ago
- Rust wrapper of the BWA C API☆18Updated 6 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Substring index for paths in a graph☆60Updated last week
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 8 months ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆103Updated 3 weeks ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated 2 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- PacBio BAM C++ library☆21Updated 2 years ago