seqan / sharg-parserLinks
The modern argument parser for c++ tools
☆11Updated last week
Alternatives and similar repositories for sharg-parser
Users that are interested in sharg-parser are comparing it to the libraries listed below
Sorting:
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Library for the Handle Graph abstraction☆23Updated 2 months ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated last week
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆52Updated last week
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Histosketching Using Little Kmers☆57Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- For bluntifying overlapped GFAs☆13Updated 10 months ago
- A repository for generating strobemers and evalaution☆78Updated last year
- Useful scripts and tools related to alevin-fry☆9Updated 2 years ago
- Fast interval intersection library☆40Updated 3 months ago
- Bidirectional WFA (Paper)☆46Updated last year
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- ☆26Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 11 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 7 months ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- ☆36Updated last month
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- De novo clustering of long transcript reads into genes☆66Updated last month
- Project Manager for NGS data analysis☆31Updated 2 years ago