ncbi / vadr
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
โ108Updated this week
Alternatives and similar repositories for vadr:
Users that are interested in vadr are comparing it to the libraries listed below
- Pairwise SNP distance matrix from a FASTA sequence alignmentโ132Updated last year
- Bioinformatics Pipeline and Visualization resourcesโ55Updated 7 months ago
- SEER, reimplemented in python ๐๐ฎโ120Updated 5 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogenyโ120Updated last year
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), witโฆโ91Updated last year
- Antimicrobial Resistance Identification By Assemblyโ173Updated last year
- SKESA assemblerโ115Updated 5 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomesโ114Updated 10 months ago
- PopPUNK ๐จโ๐ค (POPulation Partitioning Using Nucleotide Kmers)โ97Updated last week
- Catalog of genomic indexes freely available from public cloudsโ59Updated 2 months ago
- โ48Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.โ94Updated 2 years ago
- Read Assembly and Annotation Pipeline Toolโ57Updated 5 months ago
- A scalable bacterial genome assembly, annotation and analysis pipelineโ73Updated last year
- Massively parallel phylogenetic placement of genetic sequencesโ82Updated 2 years ago
- Create a tree using Mash distancesโ159Updated last year
- Metagenomic classification of long-read sequencing dataโ77Updated last week
- ARTIC SARS-CoV-2 workflow and reportingโ50Updated 3 months ago
- Foreign Contamination Screening caller scripts and documentationโ129Updated last week
- A toolbox for comparative genomics.โ101Updated 3 years ago
- snipit: summarise snps relative to your reference sequenceโ155Updated 2 months ago
- Antibiotic resistance prediction in minutesโ107Updated 4 months ago
- CDCgov/mycosnp-nfโ49Updated this week
- Collection of scripts for bacterial genomicsโ45Updated 5 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assembliesโ140Updated 5 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classesโ75Updated 7 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomicsโ89Updated 2 weeks ago
- a short-read polishing tool for long-read assembliesโ156Updated 9 months ago
- DAS Toolโ147Updated 10 months ago
- The ARTIC field bioinformatics pipelineโ121Updated 3 weeks ago