ncbi / vadr
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
☆106Updated last week
Alternatives and similar repositories for vadr:
Users that are interested in vadr are comparing it to the libraries listed below
- Bioinformatics Pipeline and Visualization resources☆55Updated 5 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆129Updated 11 months ago
- Antimicrobial Resistance Identification By Assembly☆173Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆112Updated 9 months ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆54Updated last year
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆81Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆92Updated 2 years ago
- Read Assembly and Annotation Pipeline Tool☆56Updated 4 months ago
- ☆48Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆153Updated 3 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆134Updated 4 months ago
- Antibiotic resistance prediction in minutes☆107Updated 2 months ago
- SEER, reimplemented in python 🐍🔮☆115Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆75Updated last week
- Create a tree using Mash distances☆157Updated last year
- CDCgov/mycosnp-nf☆45Updated 2 months ago
- Reference-based consensus creation☆51Updated this week
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Updated 9 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆72Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆116Updated 3 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆103Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 4 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆120Updated 11 months ago
- SKESA assembler☆114Updated 4 months ago
- Comparison of multiple long read datasets☆122Updated 2 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆97Updated 4 months ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆133Updated 2 months ago
- Bioinformatics program inStrain☆159Updated 9 months ago