ncbi / vadr
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
☆103Updated last month
Alternatives and similar repositories for vadr:
Users that are interested in vadr are comparing it to the libraries listed below
- Catalog of genomic indexes freely available from public clouds☆58Updated last month
- Pairwise SNP distance matrix from a FASTA sequence alignment☆128Updated 10 months ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 4 months ago
- SEER, reimplemented in python 🐍🔮☆115Updated 2 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Assembly and intrahost/low-frequency variant calling for viral samples☆129Updated last week
- snipit: summarise snps relative to your reference sequence☆151Updated 2 months ago
- Read Assembly and Annotation Pipeline Tool☆56Updated 3 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆81Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆111Updated 7 months ago
- Metagenomic classification of long-read sequencing data☆69Updated last month
- Foreign Contamination Screening caller scripts and documentation☆111Updated 2 months ago
- Making whole bacterial genome sequencing data analysis easy☆102Updated 2 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆92Updated 2 years ago
- Antimicrobial Resistance Identification By Assembly☆172Updated last year
- SKESA assembler☆113Updated 3 months ago
- Antibiotic resistance prediction in minutes☆106Updated last month
- Massively parallel phylogenetic placement of genetic sequences☆80Updated 2 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆145Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆126Updated 3 months ago
- An updated pipeline for pangenome investigation☆274Updated 3 months ago
- ☆68Updated 4 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆119Updated 10 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated last year
- Reference-based consensus creation☆51Updated this week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆180Updated last week
- DAS Tool☆142Updated 8 months ago
- Comparison of multiple long read datasets☆121Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆97Updated last year
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆96Updated 3 months ago