Alternatives and similar repositories for metacache

Users that are interested in metacache are comparing it to the libraries listed below

• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆56Updated 2 years ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆70Updated last year
• seqan / raptor
  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
  ☆53Updated 2 weeks ago
• tlemane / kmtricks
  modular k-mer count matrix and Bloom filter construction for large read collections
  ☆85Updated 3 weeks ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆56Updated last year
• yhg926 / public_kssd
  K-mer substring space decomposition
  ☆44Updated 4 months ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆55Updated 3 months ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated 2 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆55Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated last month
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆46Updated 3 weeks ago
• marbl / MetaCarvel
  MetaCarvel: A scaffolder for metagenomes
  ☆14Updated last year
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆48Updated this week
• PASSIONLab / BELLA
  BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
  ☆52Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated 9 months ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆59Updated 3 weeks ago
• will-rowe / genome-sketching
  online notebooks for a review of genome sketching
  ☆60Updated 6 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 9 months ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆81Updated last week
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆48Updated last year
• isovic / raptor
  Graph-based mapping of long sequences, noisy or HiFi.
  ☆55Updated 5 years ago
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆25Updated 2 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 5 months ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆86Updated 10 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 6 months ago
• zhaoxiaofei / bindash
  Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
  ☆71Updated 5 months ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year