Alternatives and similar repositories for metacache

Users that are interested in metacache are comparing it to the libraries listed below

• tlemane / kmtricks
  modular k-mer count matrix and Bloom filter construction for large read collections
  ☆84Updated 9 months ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆64Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• seqan / raptor
  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
  ☆53Updated last week
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆44Updated 7 months ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 2 months ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆41Updated 5 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆57Updated 2 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆51Updated last year
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• yhg926 / public_kssd
  K-mer substring space decomposition
  ☆42Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆51Updated this week
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆76Updated last month
• VGP / vgp-tools
  ☆28Updated 3 months ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆80Updated 8 months ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆87Updated 2 months ago
• PASSIONLab / BELLA
  BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
  ☆49Updated 3 years ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆60Updated 2 weeks ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• pirovc / ganon
  ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…
  ☆97Updated 3 months ago
• fmfi-compbio / deepnano-blitz
  Very fast ONT basecaller
  ☆53Updated 3 years ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 2 years ago
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆67Updated 8 months ago
• umerijaz / TAXAassign
  Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy
  ☆19Updated 11 years ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆84Updated 9 months ago