gpertea / gclibLinks
GCLib - Genomic C++ library of reusable code for bioinformatics projects
☆34Updated last month
Alternatives and similar repositories for gclib
Users that are interested in gclib are comparing it to the libraries listed below
Sorting:
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆27Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- PacBio BAM C++ library☆21Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆87Updated last month
- Bidirectional WFA (Paper)☆46Updated last year
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Useful set of classes for creating statistical genetic programs.☆52Updated 2 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆30Updated 5 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 4 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- new repo☆28Updated 4 years ago
- Complete assemblies of non-human primate genomes☆50Updated last month
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Assembled Genomes Compressor☆166Updated 7 months ago
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago