pskeshu / microscoperLinks
A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
☆12Updated 3 years ago
Alternatives and similar repositories for microscoper
Users that are interested in microscoper are comparing it to the libraries listed below
Sorting:
- ☆15Updated 5 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆79Updated 2 weeks ago
- Robust quad-tree based registration on whole slide images☆19Updated 4 months ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- A whole-slide image reader for TensorFlow☆24Updated 10 months ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Updated 4 years ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10Updated 8 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 4 years ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Pretrained parameters for CT deep learning models.☆13Updated 5 years ago
- Dense Steerable Filter CNN☆76Updated 2 years ago
- WSICS☆30Updated 6 years ago
- Cython based wrapper for IRTK☆10Updated 9 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- [AVI 2020] UTA4: Medical Imaging DICOM files dataset.☆17Updated 4 years ago
- evalutils helps users create extensions for grand-challenge.org☆23Updated 4 months ago
- Fill holes in binary 2D & 3D images fast.☆26Updated last month
- Intelligent data partitioning using quality control metrics☆18Updated 2 months ago
- BIRL: Benchmark on Image Registration methods with Landmark validations☆93Updated 3 years ago
- Official Implementation of ECONet: Efficient Convolutional Online Likelihood Network for Interactive Segmentation☆18Updated 2 years ago
- MIDL 2018 / MEDIA 2019: one binary extremely large and inflecting sparse kernel (pytorch)☆44Updated 5 years ago
- Axon/Myelin segmentation using Deep Learning☆122Updated last week
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Slicer extension for TOMAAT☆16Updated last year
- Atlas of Digital Pathology for Deep Learning [CVPR2019]☆24Updated 5 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- Example Code for Self-Supervised Feature Learning in Medical Volume Scans☆15Updated 5 years ago