pskeshu / microscoperLinks
A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
☆12Updated 3 years ago
Alternatives and similar repositories for microscoper
Users that are interested in microscoper are comparing it to the libraries listed below
Sorting:
- ☆15Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Updated 5 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Updated 4 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Updated 5 months ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- Dense Steerable Filter CNN☆77Updated 3 years ago
- Material for the 2020 MONAI Bootcamp☆64Updated 4 years ago
- WSICS☆30Updated 6 years ago
- Survival Convolutional Neural Networks☆67Updated 2 years ago
- A whole-slide image reader for TensorFlow☆24Updated last month
- Robust quad-tree based registration on whole slide images☆21Updated 9 months ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆52Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Updated 3 years ago
- [AVI 2020] UTA4: Medical Imaging DICOM files dataset.☆17Updated 5 years ago
- A Python API for deploying deep neural networks for Neuroimaging research. Powered by IMG at Stevens Neuroimaging and Informatics Institu…☆37Updated 4 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 3 years ago
- Fill holes in binary 2D & 3D images fast.☆28Updated 4 months ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- A PyTorch implementation of the Probabilistic U-Net, applied to probabilistic glioma growth☆43Updated 6 years ago
- BIRL: Benchmark on Image Registration methods with Landmark validations☆94Updated 4 years ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10Updated 8 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Updated 3 years ago
- ☆53Updated 10 months ago
- Axon/Myelin segmentation using Deep Learning☆124Updated 3 weeks ago
- Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis☆49Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- Intelligent data partitioning using quality control metrics☆19Updated 7 months ago