pskeshu / microscoperLinks
A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
☆12Updated 3 years ago
Alternatives and similar repositories for microscoper
Users that are interested in microscoper are comparing it to the libraries listed below
Sorting:
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- ☆15Updated 6 years ago
- Robust quad-tree based registration on whole slide images☆21Updated 10 months ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Updated 4 years ago
- Feature Aware Normalization - Code for "Context-based Normalization of Histological Stains using Deep Convolutional Features"☆15Updated 7 years ago
- Survival Convolutional Neural Networks☆67Updated 2 years ago
- ☆53Updated 11 months ago
- A whole-slide image reader for TensorFlow☆24Updated 2 months ago
- A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)☆51Updated 5 years ago
- Gifsplanation - Explaining neural networks with gifs!☆27Updated 2 years ago
- counterfactuals for magnetic resonance images of multiple sclerosis☆26Updated 4 years ago
- Dense Steerable Filter CNN☆77Updated 3 years ago
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Updated 3 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆61Updated 3 years ago
- PyTorch-based implementation of Max-flow/Min-cut (graphcut) for 2D/3D data☆15Updated 3 years ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Updated 3 years ago
- Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.☆14Updated 2 weeks ago
- [AVI 2020] UTA4: Medical Imaging DICOM files dataset.☆17Updated 5 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- Axon/Myelin segmentation using Deep Learning☆123Updated this week
- MIDL 2018 / MEDIA 2019: one binary extremely large and inflecting sparse kernel (pytorch)☆44Updated 6 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Updated 6 months ago
- evalutils helps users create extensions for grand-challenge.org☆23Updated 2 months ago
- To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory avail…☆101Updated 2 years ago
- A Python API for deploying deep neural networks for Neuroimaging research. Powered by IMG at Stevens Neuroimaging and Informatics Institu…☆37Updated 4 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 3 years ago
- Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding☆30Updated last year
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Updated 3 years ago