OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit
☆18Dec 3, 2025Updated 2 months ago
Alternatives and similar repositories for TACIT
Users that are interested in TACIT are comparing it to the libraries listed below
Sorting:
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 9 months ago
- ☆14Jul 24, 2024Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆26Mar 13, 2025Updated 11 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 5 months ago
- ☆25Aug 20, 2024Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Jan 9, 2026Updated last month
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆36Jul 29, 2025Updated 7 months ago
- ☆29Dec 15, 2021Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- A foundation model for single-cell epigenomic data☆58Jan 6, 2026Updated last month
- ☆157Jul 3, 2024Updated last year
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Final repository for the project "Unsupervised Machine Learning for the Classification of Astrophysical X-ray Sources". V. S. Pérez-Díaz,…☆10Jan 23, 2024Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Sep 24, 2025Updated 5 months ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆15Jul 4, 2025Updated 7 months ago
- An Elder Scrolls neural name generator trained using PyTorch☆10Jan 29, 2019Updated 7 years ago
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆16Apr 21, 2023Updated 2 years ago
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN),图神经网络(GNN),NLP,大数据相关的发展路书(roadmap), 并附海量源码(python,pytorch)带大家消化基本知识点,突破面试,完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- Basics of the OSCA book☆14Sep 29, 2025Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆24Sep 3, 2025Updated 5 months ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆210Feb 2, 2026Updated last month
- ☆11Apr 10, 2023Updated 2 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Aug 1, 2025Updated 7 months ago
- SDK for PL25A1 USB 2.0 Host-to-Host Bridge Controller☆12Jun 23, 2017Updated 8 years ago
- SNp Exploration and Analysis using EPigenomics data☆11Jan 14, 2025Updated last year
- ☆13Jan 23, 2025Updated last year
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignme…☆12Oct 22, 2025Updated 4 months ago
- VHCI bridge between linux and Espressif ESP32☆10Dec 7, 2017Updated 8 years ago
- ☆12Jul 10, 2022Updated 3 years ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- An efficient tool for large-scale correlation network analysis☆14Dec 27, 2024Updated last year
- PCORnet Ontology to OMOP - beta!☆11Feb 7, 2024Updated 2 years ago
- ☆10Oct 27, 2015Updated 10 years ago