PyPop: Python for Population Genomics
☆25Oct 27, 2026Updated this week
Alternatives and similar repositories for pypop
Users that are interested in pypop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- neural network for estimating demographic maps from SNPs☆13Oct 13, 2026Updated 2 weeks ago
- ☆12Jun 12, 2023Updated 3 years ago
- A set of processes/pipelines for bioinformatics☆15Oct 18, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 4 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 7 months ago
- a set of NGS pipelines☆25Oct 16, 2026Updated 2 weeks ago
- Scripts for analysis used during the course☆98Apr 30, 2024Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository☆10Oct 23, 2024Updated 2 years ago
- ☆10Jan 20, 2026Updated 9 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆19Jul 15, 2022Updated 4 years ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Statistical Rethinking Course 2024 with Python☆10Jan 7, 2024Updated 2 years ago
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆23Sep 13, 2023Updated 3 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆13Sep 19, 2024Updated 2 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 10 months ago
- ☆10May 17, 2022Updated 4 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- ☆10Mar 4, 2025Updated last year
- A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc☆11Apr 2, 2018Updated 8 years ago