alexlancaster / pypopView external linksLinks
PyPop: Python for Population Genomics
☆25Updated this week
Alternatives and similar repositories for pypop
Users that are interested in pypop are comparing it to the libraries listed below
Sorting:
- ☆12Jun 12, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated last year
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆23Jul 4, 2023Updated 2 years ago
- high-performance BED-to-GTF converter written in Rust☆17Nov 20, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆22Sep 13, 2023Updated 2 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Repository☆10Oct 23, 2024Updated last year
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- A series of scripts to automate sequence workflows☆19Jan 24, 2026Updated 3 weeks ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- ☆10Dec 2, 2025Updated 2 months ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jan 2, 2026Updated last month
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Feb 3, 2026Updated last week
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- ☆10May 17, 2022Updated 3 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- My submissions for the #30DayChartChallenge held on April 2022☆14May 11, 2022Updated 3 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- ☆10Apr 13, 2022Updated 3 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Feb 23, 2023Updated 2 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- shared scripts in Lu Lab @ Tsinghua University☆14Nov 7, 2018Updated 7 years ago
- ☆13Sep 7, 2022Updated 3 years ago
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- Contributions to the #30daychartchallenge☆10Apr 10, 2025Updated 10 months ago
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- My attempts at recreating the visualisations by W.E.B. DuBois as part of the DuBois Challenge.☆11Jan 5, 2023Updated 3 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago