PyPop: Python for Population Genomics
☆25Mar 23, 2026Updated this week
Alternatives and similar repositories for pypop
Users that are interested in pypop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆39May 21, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Course in population genomics at BiRC☆12Mar 18, 2026Updated last week
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Repository☆10Oct 23, 2024Updated last year
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- high-performance BED-to-GTF converter written in Rust☆19Mar 19, 2026Updated last week
- a set of NGS pipelines☆24Mar 10, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆22Sep 13, 2023Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last month
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- A series of scripts to automate sequence workflows☆19Mar 21, 2026Updated last week
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆10May 17, 2022Updated 3 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- ☆12May 6, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Contributions to the #30daychartchallenge☆10Apr 10, 2025Updated 11 months ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year