Alternatives and similar repositories for TrajectoryNet

Users that are interested in TrajectoryNet are comparing it to the libraries listed below

• KrishnaswamyLab / MIOFlow
  ☆27Updated last week
• bunnech / phd_thesis
  PhD Thesis
  ☆34Updated last year
• bunnech / condot
  Supervised Training of Conditional Monge Maps
  ☆18Updated last year
• causalbench / causalbench
  ☆44Updated last month
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆140Updated 8 months ago
• Genentech / sVAE
  ☆63Updated last year
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆73Updated last year
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated 3 months ago
• atong01 / MultiscaleEMD
  Multiscale earth mover's distance methods for tree and manifold structured data
  ☆11Updated 4 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆35Updated last year
• KrishnaswamyLab / DiffusionEMD
  Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings
  ☆37Updated 7 months ago
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆39Updated 2 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• franciscovargas / GP_Sinkhorn
  GP Sinkhorn Implementation, paper: https://www.mdpi.com/1099-4300/23/9/1134
  ☆23Updated 3 years ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆118Updated 5 months ago
• broadinstitute / wot
  A software package for analyzing snapshots of developmental processes
  ☆146Updated 2 years ago
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆55Updated 5 months ago
• Genentech / dcdfg
  ☆25Updated 2 years ago
• dpeerlab / WassersteinWormhole
  Transformer Based Embeddings of Wasserstein Distance
  ☆18Updated this week
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆102Updated 11 months ago
• ioanabica / DiffVAE
  Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…
  ☆18Updated 4 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 2 months ago
• lazaratan / dyn-gfn
  DynGFN: Bayesian Dynamic Causal Discovery using Generative Flow Networks
  ☆55Updated last year
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 3 months ago
• ratschlab / SVGP-VAE
  Tensorflow implementation for the SVGP-VAE model.
  ☆22Updated 3 years ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year