mrmckain / PUGLinks
Testing WGD placement along a species tree using gene trees.
☆9Updated 6 years ago
Alternatives and similar repositories for PUG
Users that are interested in PUG are comparing it to the libraries listed below
Sorting:
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- ☆20Updated 3 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆10Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week
- Likelihood-based Selective Sweep Detection☆37Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆39Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- DFOIL: Introgression Testing for Five Taxa☆32Updated 4 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆29Updated 2 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- ☆24Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 6 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆9Updated 4 years ago
- ☆40Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Software package for estimating fine-scale recombination rate.☆14Updated 4 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago