mrmckain / PUG
Testing WGD placement along a species tree using gene trees.
☆9Updated 6 years ago
Alternatives and similar repositories for PUG:
Users that are interested in PUG are comparing it to the libraries listed below
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆19Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆30Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆10Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆16Updated 4 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆29Updated last month
- DFOIL: Introgression Testing for Five Taxa☆30Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Automated pipeline for running CoalHMM☆12Updated last year
- ☆40Updated last year
- ☆23Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- ☆27Updated last week
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 months ago
- Multi-genome synteny block visualization tool☆33Updated 2 months ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated last month
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Genome Annotation Pipeline☆35Updated 7 months ago