fastrgz is a fast and efficient gzip compression tool for sequencing data (FASTQ)
☆30Jun 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for fastrgz
Users that are interested in fastrgz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- Rust-based sra-tools☆69Updated this week
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- Blazingly fast, streaming duplicate detection for NGS data☆17Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- Complex structural variant visualization for HiFi sequencing data☆49Oct 24, 2025Updated 8 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆57Mar 31, 2023Updated 3 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆58Jun 30, 2025Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 3 months ago
- An iobio app for examining gene variants☆20Sep 10, 2018Updated 7 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Mar 31, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆17Mar 19, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Jul 1, 2026Updated last week
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆84Oct 7, 2025Updated 9 months ago
- Faster subsetting of vectors and lists by name☆25Mar 25, 2026Updated 3 months ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 6 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Sep 12, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated last year
- ☆46Jun 27, 2026Updated 2 weeks ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆17Jul 7, 2026Updated last week
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆23Apr 12, 2023Updated 3 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 7 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 2 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Jan 28, 2024Updated 2 years ago