fastrgz is a fast and efficient gzip compression tool for sequencing data (FASTQ)
☆31Jun 18, 2026Updated 4 months ago
Alternatives and similar repositories for fastrgz
Users that are interested in fastrgz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 6 months ago
- Rust-based sra-tools☆77Updated this week
- Tearing through FASTA/Q sequences☆41Updated this week
- A nextflow pipeline for calling modifications in nanopore reads.☆17Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 11 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆18Mar 19, 2023Updated 3 years ago
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆63Sep 10, 2026Updated last month
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Updated this week
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Accelerated genomics workflows in NextFlow☆45Sep 11, 2024Updated 2 years ago
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆21Aug 10, 2026Updated 2 months ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆19Sep 4, 2024Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- An iobio app for examining gene variants☆21Sep 10, 2018Updated 8 years ago
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 5, 2026Updated 2 weeks ago
- API-first variant triage pipeline combining genomic filtering, annotation, and LLM-driven interpretation for clinical genomics workflows☆21Apr 28, 2026Updated 5 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- ☆17Oct 1, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆57Mar 31, 2023Updated 3 years ago
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated 2 months ago
- ☆22Oct 6, 2023Updated 3 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- run-length BWT tools for genomic sequences☆18May 19, 2022Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆16Sep 27, 2022Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Spiritual successor to picard for sequencing qc☆64Updated this week
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Oct 13, 2026Updated last week
- Manager for multi-container computing environments☆25Mar 6, 2026Updated 7 months ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆42Updated this week