molgenis / molgenis-pipelinesLinks
Pipelines for NGS, imputation, gwas, ...
☆28Updated 5 years ago
Alternatives and similar repositories for molgenis-pipelines
Users that are interested in molgenis-pipelines are comparing it to the libraries listed below
Sorting:
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 9 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Genomic plot in trellis layout☆40Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- a set of NGS pipelines☆24Updated 2 weeks ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Simulation of rare and common variants based on 1000 genomes data☆19Updated 3 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆45Updated this week
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆12Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- DriverPower☆26Updated 6 months ago
- A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.☆19Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated this week
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Updated last year
- QTL analysis software for high-dimensional data and complex cross designs☆34Updated last month
- TOP results by CONfident efFECT Sizes.☆14Updated 7 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 10 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago