jigold / zCallLinks
A Rare Variant Caller for Array-based Genotyping
☆25Updated 10 years ago
Alternatives and similar repositories for zCall
Users that are interested in zCall are comparing it to the libraries listed below
Sorting:
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- ☆40Updated 7 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆25Updated 3 weeks ago
- ☆46Updated 5 years ago
- Integrated copy number variation detection toolset☆26Updated 5 years ago
- processing illumina SNP arrays☆19Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Somatic variant identification from unpaired samples☆15Updated 8 years ago
- Script to convert GTC/BPM files to VCF☆46Updated 9 months ago
- R package to work with ctDNA sequencing data☆41Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- ☆78Updated 11 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- ☆68Updated 3 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Updated 6 years ago
- An awk-like VCF parser☆56Updated last year