jigold / zCall
A Rare Variant Caller for Array-based Genotyping
☆25Updated 10 years ago
Alternatives and similar repositories for zCall
Users that are interested in zCall are comparing it to the libraries listed below
Sorting:
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- processing illumina SNP arrays☆19Updated 8 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- ☆40Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- ☆46Updated 5 years ago
- ☆78Updated 11 years ago
- ☆25Updated 11 months ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 6 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- R package to work with ctDNA sequencing data☆40Updated 3 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago