☆27Mar 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for capice
Users that are interested in capice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant Interpretation Pipeline☆48Updated this week
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 4 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆88Mar 16, 2026Updated last week
- A simple script to create a customizable html file from an AnnotSV output.☆20May 3, 2024Updated last year
- A new tool to infer sex from massively parallel sequencing data.☆17May 16, 2025Updated 10 months ago
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆69Jan 8, 2026Updated 2 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 2 months ago
- CADD-SV – a framework to score the effect of structural variants☆18Feb 11, 2026Updated last month
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- ☆39Jul 3, 2025Updated 8 months ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 8 months ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 4 months ago
- Python wrapper for MaxEntScan to calculate splice site strength.☆17Jul 8, 2022Updated 3 years ago
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆19Oct 27, 2021Updated 4 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Updated this week
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 10 years ago
- A Mendelian approach to variant effect prediction built in keras☆20Nov 3, 2025Updated 4 months ago
- ☆16Oct 17, 2024Updated last year
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- Short-read and long-read sequencing tools for diagnostics☆174Updated this week
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 4 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- ☆19Jul 28, 2025Updated 7 months ago
- ☆11Apr 3, 2023Updated 2 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.☆11Jan 27, 2022Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Mar 9, 2026Updated last week
- A Python library for performing DNA fragment-analysis☆13Aug 28, 2018Updated 7 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆92Oct 30, 2025Updated 4 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- Basic UPD caller☆12Aug 23, 2021Updated 4 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- ☆19Mar 14, 2022Updated 4 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago