A deep learning framework for deubiquitnase-substrate interaction identification
☆12Jul 31, 2025Updated 7 months ago
Alternatives and similar repositories for TransDSI
Users that are interested in TransDSI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆40Dec 8, 2025Updated 3 months ago
- Accurate prediction of drug–target interactions in drug discovery.☆10Dec 9, 2025Updated 3 months ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆13Mar 19, 2024Updated 2 years ago
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated last year
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Dec 10, 2024Updated last year
- This is the official implementation of the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via React…☆20Sep 28, 2024Updated last year
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆28Sep 12, 2023Updated 2 years ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆55Dec 27, 2023Updated 2 years ago
- Structure-aware PRotein ligand INTeraction (SPRINT) is a ultrafast deep learning framework for drug-target interaction prediction.☆15Feb 19, 2026Updated last month
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 7 months ago
- ☆82Jan 8, 2024Updated 2 years ago
- Fragment binding prediction with ColabFold☆42Nov 9, 2025Updated 4 months ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Jul 16, 2020Updated 5 years ago
- Github for the TOPCONS2☆17Mar 6, 2025Updated last year
- ☆50Sep 4, 2025Updated 6 months ago
- A structure checker in python☆24Nov 25, 2024Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- ICLR 2025 paper: 3DMolFormer: A Dual-channel Framework for Structure-based Drug Discovery☆28Apr 25, 2025Updated 11 months ago
- The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…☆28Aug 26, 2025Updated 7 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆75Mar 27, 2025Updated 11 months ago
- ☆48Aug 7, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- T-ALPHA: a hierarchical transformer-based deep neural network for protein-ligand binding affinity prediction with uncertainty-aware self-…☆30Feb 24, 2025Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆28Jan 8, 2024Updated 2 years ago
- Source code accompanying the 'MF-PCBA: Multi-fidelity high-throughput screening benchmarks for drug discovery and machine learning' paper☆31Jul 29, 2025Updated 7 months ago
- ColabFold protocol☆58Oct 17, 2024Updated last year
- A Spatial-temporal Gated Attention Module for Molecular Property Prediction Based on Molecular Geometry☆32Apr 17, 2021Updated 4 years ago
- Fragment-based Molecular Expansion☆27Jan 11, 2024Updated 2 years ago
- ☆30Sep 8, 2024Updated last year
- An antibody-specific language model focusing on NGL prediction☆37Aug 22, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆22May 31, 2023Updated 2 years ago
- Structure prediction of alternative protein conformations☆83Feb 24, 2025Updated last year
- ☆28Updated this week
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21May 4, 2020Updated 5 years ago
- Making Protein folding accessible to all!☆26Updated this week
- Tutorial of Writing R Packages a Modern Workflow for beginners☆14Feb 17, 2021Updated 5 years ago
- ☆25Mar 15, 2024Updated 2 years ago