Exploring Evolution-aware & free protein language models as protein function predictors
☆63Sep 28, 2024Updated last year
Alternatives and similar repositories for Revisiting-PLMs
Users that are interested in Revisiting-PLMs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of GEFA: Early Fusion Approach in Drug-Target Affinity Prediction☆22Sep 30, 2020Updated 5 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆101Mar 18, 2023Updated 3 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Feb 1, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆163May 1, 2021Updated 4 years ago
- Evolla: A frontier protein-language generative model designed to decode the molecular language of proteins.☆65Updated this week
- ☆10Nov 10, 2023Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- ☆214Sep 24, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆413Mar 25, 2026Updated 3 weeks ago
- ☆137Jun 3, 2025Updated 10 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Nov 1, 2023Updated 2 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- neuropeptide prediction☆13Sep 2, 2022Updated 3 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- ☆257Jul 31, 2024Updated last year
- ☆37Jan 26, 2026Updated 2 months ago
- Official release of the ProGen models☆698Aug 4, 2023Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆172Dec 24, 2023Updated 2 years ago
- Awesome Protein Representation Learning☆686Nov 16, 2024Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,299May 22, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆23Aug 6, 2025Updated 8 months ago
- ☆17Apr 28, 2020Updated 5 years ago
- Generative Models for Graph-Based Protein Design☆288Dec 24, 2020Updated 5 years ago
- OmegaFold Release Code☆617Dec 12, 2022Updated 3 years ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated 11 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆736Dec 11, 2022Updated 3 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆357Jun 29, 2023Updated 2 years ago
- ☆572Apr 7, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and easy contact prediction.☆38May 24, 2024Updated last year
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆47Aug 3, 2021Updated 4 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆585Mar 8, 2026Updated last month
- ☆28Aug 26, 2025Updated 7 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago