elttaes / Revisiting-PLMs
Exploring Evolution-aware & free protein language models as protein function predictors
☆60Updated last month
Related projects ⓘ
Alternatives and complementary repositories for Revisiting-PLMs
- Code for 'On Pre-trained Language Models For Antibody'☆30Updated last year
- The first large protein language model trained follows structure instructions.☆71Updated 5 months ago
- Generative Language Modeling for Antibody Design☆130Updated last month
- MSAGPT☆25Updated this week
- ☆126Updated 2 years ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆49Updated last year
- ☆37Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆82Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆93Updated 7 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆87Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆86Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆83Updated 2 weeks ago
- ☆66Updated last year
- Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners☆76Updated this week
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆94Updated last month
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆39Updated last year
- ☆159Updated 2 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2024☆43Updated 4 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆37Updated 8 months ago
- ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning☆59Updated this week
- MSA Transformer reproduction code☆70Updated 3 years ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆29Updated 3 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆68Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆42Updated 3 weeks ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- open source repository☆125Updated 11 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆139Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆88Updated last year