Alternatives and similar repositories for PXMeter

Users that are interested in PXMeter are comparing it to the libraries listed below

• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆64Updated 3 months ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆57Updated 3 weeks ago
• CataAI / PoseX
  PoseX: A Molecular Docking Benchmark
  ☆47Updated last month
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆42Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆45Updated 9 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆47Updated last month
• ohuelab / ColabDesign-cyclic-binder
  ☆33Updated 2 years ago
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆27Updated 3 months ago
• SigmaGenX / TamGen
  ☆38Updated 3 months ago
• ProteinDesignLab / IgVAE
  A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.
  ☆29Updated 3 years ago
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆24Updated 2 weeks ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated last week
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 6 months ago
• feiglab / idpgan
  ☆48Updated 8 months ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆49Updated 2 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆70Updated 3 weeks ago
• luwei0917 / BindingGYM
  ☆28Updated last month
• karma211225 / KarmaLoop
  Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop
  ☆14Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆46Updated 7 months ago
• Minys233 / Dynaformer
  ☆30Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆36Updated last month
• Junjie-Zhu / IDPFold
  IDPFold test version
  ☆21Updated 11 months ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆36Updated last month
• KhondamirRustamov / FoldCraft
  ☆37Updated 3 weeks ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆40Updated 6 months ago
• huhlim / cg2all
  Convert coarse-grained protein structure to all-atom model
  ☆43Updated 2 months ago
• CarbonMatrixLab / AbX
  Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints
  ☆39Updated 2 months ago