Gene2Vec: Distributed Representation of Genes Based on Co-Expression
☆140Mar 18, 2022Updated 4 years ago
Alternatives and similar repositories for Gene2vec
Users that are interested in Gene2vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆359Dec 13, 2023Updated 2 years ago
- ☆85Jan 9, 2026Updated 6 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- SmuDGE: Semantic Disease Gene Embeddings☆12Jul 11, 2018Updated 8 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆342May 23, 2025Updated last year
- ☆1,608Apr 29, 2026Updated 2 months ago
- ☆423Nov 23, 2025Updated 8 months ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- ☆511Jul 15, 2026Updated last week
- UCE is a zero-shot foundation model for single-cell gene expression data☆312Jul 8, 2026Updated 2 weeks ago
- Create cell sentences from sequencing data☆23Aug 12, 2024Updated last year
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- ☆50Sep 23, 2025Updated 10 months ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- ☆13Jun 4, 2023Updated 3 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- ☆90Jun 24, 2023Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- ☆863Apr 20, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆28Dec 15, 2021Updated 4 years ago
- ☆321Mar 18, 2024Updated 2 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- Variational Auto-Encoder that generates synthetic gene expression data☆25Apr 7, 2023Updated 3 years ago
- ☆23Mar 20, 2023Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Reusability report of scBERT☆14Jul 14, 2024Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆31Jul 2, 2025Updated last year
- ☆11Apr 1, 2024Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,667Updated this week
- covolutional neural network based coexpression analysis☆79Jun 13, 2020Updated 6 years ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago