Gene2Vec: Distributed Representation of Genes Based on Co-Expression
☆139Mar 18, 2022Updated 4 years ago
Alternatives and similar repositories for Gene2vec
Users that are interested in Gene2vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆356Dec 13, 2023Updated 2 years ago
- ☆83Jan 9, 2026Updated 4 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- SmuDGE: Semantic Disease Gene Embeddings☆12Jul 11, 2018Updated 7 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆341May 23, 2025Updated last year
- ☆1,566Apr 29, 2026Updated 3 weeks ago
- ☆410Nov 23, 2025Updated 6 months ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 4 years ago
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- Create cell sentences from sequencing data☆23Aug 12, 2024Updated last year
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- ☆449Jan 21, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Jun 4, 2023Updated 2 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆255Feb 26, 2026Updated 3 months ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Nov 16, 2018Updated 7 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- ☆28Dec 15, 2021Updated 4 years ago
- ☆89Jun 24, 2023Updated 2 years ago
- ☆856Apr 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.☆125Mar 19, 2026Updated 2 months ago
- ☆318Mar 18, 2024Updated 2 years ago
- ML-Net is a novel end-to-end deep learning framework for multi-label classification of biomedical tasks. ML-Net combines the label predic…☆15May 7, 2019Updated 7 years ago
- Variational Auto-Encoder that generates synthetic gene expression data☆25Apr 7, 2023Updated 3 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reusability report of scBERT☆14Jul 14, 2024Updated last year
- ☆11Apr 1, 2024Updated 2 years ago
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Jul 2, 2025Updated 10 months ago
- ☆23Mar 20, 2023Updated 3 years ago
- source codes based on PyTorch to analyze EHR☆150Jan 22, 2024Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆45Feb 19, 2026Updated 3 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago