Python package to plot sequence logos
☆29Sep 21, 2023Updated 2 years ago
Alternatives and similar repositories for pyseqlogo
Users that are interested in pyseqlogo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 7 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 7 months ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- An R package for estimating library complexity☆13Aug 25, 2026Updated 3 weeks ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A simple pythonic interface to biomart.☆60Feb 6, 2020Updated 6 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 3 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- A proviral intactness pipeline.☆10May 31, 2023Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago
- ☆10May 16, 2020Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Aug 14, 2026Updated last month
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Jan 6, 2021Updated 5 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach☆12Mar 17, 2026Updated 6 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- A comprehensive repository of scripts, software, and tutorials for molecular evolution, computational protein design, and structural bioi…☆33Jul 26, 2026Updated last month
- 🧬Genomes to proteins, multi-level visualization library☆17May 22, 2026Updated 3 months ago
- A python extension for quick access to bigWig and bigBed files☆251Updated this week
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Oct 27, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆20Dec 30, 2021Updated 4 years ago
- Software for the visualization of sequence-function relationships☆215Jan 6, 2026Updated 8 months ago
- R package for subset- and name-aware array utility functions☆26Nov 28, 2025Updated 9 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Mar 5, 2021Updated 5 years ago
- ☆25Feb 24, 2026Updated 6 months ago