Alternatives and similar repositories for PrimateAI

Users that are interested in PrimateAI are comparing it to the libraries listed below

• shwhalen / targetfinder
  ☆84Updated 4 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆47Updated 2 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated 2 years ago
• sebriois / biomart
  Python biomart API
  ☆65Updated 2 years ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆95Updated last year
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆82Updated last month
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆75Updated last year
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆120Updated 3 months ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 9 months ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 4 years ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆232Updated 5 months ago
• FRED-2 / OptiType
  Precision HLA typing from next-generation sequencing data
  ☆199Updated last year
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆170Updated last year
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆42Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆71Updated 3 years ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆143Updated last year
• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆138Updated last year
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆128Updated 4 months ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆189Updated this week
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• humanlongevity / HLA
  xHLA: Fast and accurate HLA typing from short read sequence data
  ☆111Updated last year
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆37Updated 5 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆114Updated last year
• oncokb / oncokb-annotator
  Annotates variants in MAF with OncoKB annotation.
  ☆131Updated last week
• broadinstitute / mutect
  MuTect -- Accurate and sensitive cancer mutation detection
  ☆97Updated 2 years ago
• pb-jchin / VariantNET
  A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
  ☆58Updated 7 years ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆171Updated last year
• griffithlab / pVACtools
  ☆157Updated this week
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆37Updated 6 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago