izhangcd / DeepHF
Core code for the DeepHF prediction tool
☆36Updated 5 years ago
Alternatives and similar repositories for DeepHF:
Users that are interested in DeepHF are comparing it to the libraries listed below
- Public repository for ShapeMapper 2 releases☆34Updated 3 months ago
- HLA-II ligand predictor.☆42Updated last year
- Package to Score Sequences using Rule Set 3☆11Updated last year
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆17Updated 2 months ago
- ☆27Updated last month
- code to run sei and obtain sei and sequence class predictions☆99Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆91Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated last month
- CRISPR Cas9 ontarget prediction software☆26Updated 3 weeks ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 10 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆72Updated 8 months ago
- flexible CDR based distance metrics☆58Updated 7 months ago
- ☆37Updated 2 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆68Updated last month
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆81Updated 3 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆21Updated 2 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated last year
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 4 years ago
- ☆38Updated 3 weeks ago
- ☆53Updated 3 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆50Updated 3 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 6 months ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆22Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago