izhangcd / DeepHFLinks
Core code for the DeepHF prediction tool
☆39Updated 6 years ago
Alternatives and similar repositories for DeepHF
Users that are interested in DeepHF are comparing it to the libraries listed below
Sorting:
- ☆59Updated 4 years ago
- Package to Score Sequences using Rule Set 3☆13Updated 2 weeks ago
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- Public repository for ShapeMapper 2 releases☆40Updated 11 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆142Updated last year
- ☆67Updated 2 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆14Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- ☆34Updated 10 months ago
- ☆49Updated 3 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- ☆68Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 3 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 2 weeks ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆145Updated last month
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 4 years ago
- CRISPR Cas9 ontarget prediction software☆28Updated 8 months ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 10 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆30Updated 3 years ago
- circular RNA analysis toolset☆86Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆35Updated 9 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆26Updated last week