izhangcd / DeepHFLinks
Core code for the DeepHF prediction tool
☆39Updated 6 years ago
Alternatives and similar repositories for DeepHF
Users that are interested in DeepHF are comparing it to the libraries listed below
Sorting:
- Package to Score Sequences using Rule Set 3☆12Updated last year
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- ☆66Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆108Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆93Updated 3 years ago
- predicting expression effects of human genome variants ab initio from sequence☆131Updated 7 months ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆141Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Public repository for ShapeMapper 2 releases☆38Updated 8 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- ☆49Updated 3 years ago
- Microbial analysis in TCGA data☆91Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆27Updated 3 weeks ago
- CRISPR Cas9 ontarget prediction software☆27Updated 5 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Updated 4 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆85Updated 3 years ago
- ☆31Updated 7 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆78Updated last year
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆113Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated last month
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆161Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated this week
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆23Updated 5 months ago