Alex-Rosenberg / cell-2015Links
Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
☆34Updated 9 years ago
Alternatives and similar repositories for cell-2015
Users that are interested in cell-2015 are comparing it to the libraries listed below
Sorting:
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- A tool for bigWig files.☆118Updated 7 years ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- Galaxy RNA workbench☆40Updated 5 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- ☆49Updated 3 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆82Updated last year
- ☆57Updated 5 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Tools for analyzing DNA methylation data☆44Updated last week
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated last week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- ☆39Updated 5 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated 11 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆76Updated 5 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago