Alex-Rosenberg / cell-2015Links
Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
☆35Updated 9 years ago
Alternatives and similar repositories for cell-2015
Users that are interested in cell-2015 are comparing it to the libraries listed below
Sorting:
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆86Updated 4 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 8 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆34Updated 9 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last month
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- ☆49Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- Tools for working with BUS files☆101Updated 4 months ago
- ☆72Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 10 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- Genome-wide assessment of differential translations with ribosome profiling data☆20Updated 5 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆80Updated last year
- ☆39Updated 3 months ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 3 weeks ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 2 months ago
- Galaxy RNA workbench☆40Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last week
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago