Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
☆35May 10, 2016Updated 10 years ago
Alternatives and similar repositories for cell-2015
Users that are interested in cell-2015 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- ☆17May 22, 2025Updated last year
- Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.☆15Mar 3, 2023Updated 3 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated last week
- ☆11Dec 17, 2019Updated 6 years ago
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated last month
- VEP Plugin to annotate high-impact five prime UTR variants☆30Aug 23, 2024Updated 2 years ago
- ☆13Dec 3, 2018Updated 7 years ago
- ☆42Jul 3, 2025Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆95Apr 29, 2026Updated 4 months ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆14Mar 7, 2021Updated 5 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Nov 13, 2017Updated 8 years ago
- A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.☆11Oct 20, 2017Updated 8 years ago
- Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.☆13Jan 8, 2018Updated 8 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Aug 18, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- iread☆26Jul 16, 2021Updated 5 years ago
- Interpretable splicing model☆22Jun 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ☆24Jul 29, 2025Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆19Aug 31, 2018Updated 8 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆20Feb 23, 2022Updated 4 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆40Feb 22, 2023Updated 3 years ago
- ☆16May 27, 2017Updated 9 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 10 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago