Alex-Rosenberg / cell-2015Links
Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"
☆36Updated 9 years ago
Alternatives and similar repositories for cell-2015
Users that are interested in cell-2015 are comparing it to the libraries listed below
Sorting:
- Galaxy RNA workbench☆40Updated 4 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- Tools for working with BUS files☆100Updated last month
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated 11 months ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆73Updated 4 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 7 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- ☆48Updated 3 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆108Updated 9 months ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆76Updated last year
- ☆50Updated 4 years ago
- ☆39Updated 2 weeks ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- Extract data quickly from Juicebox via straw☆69Updated 3 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year