alipirani88 / Comparative_Genomics
Micro 612 genomics workshop
☆37Updated 4 years ago
Alternatives and similar repositories for Comparative_Genomics
Users that are interested in Comparative_Genomics are comparing it to the libraries listed below
Sorting:
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Synteny Imager☆62Updated 8 months ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆16Updated 3 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- de.NBI Nanopore Training Course☆20Updated 2 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- IS mapping software☆54Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆45Updated last month
- Genome Annotation Without Nightmares☆44Updated 3 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago