alipirani88 / Comparative_GenomicsLinks
Micro 612 genomics workshop
☆37Updated 4 years ago
Alternatives and similar repositories for Comparative_Genomics
Users that are interested in Comparative_Genomics are comparing it to the libraries listed below
Sorting:
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 6 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- Synteny Imager☆63Updated 2 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆109Updated 3 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆81Updated 3 weeks ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- Collection of scripts for bacterial genomics☆47Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated this week
- Using ggtree to build phylogenetic trees☆47Updated 9 months ago
- ☆23Updated 7 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 3 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Utilities written for bioinformatics☆17Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- IS mapping software☆56Updated 3 years ago
- Development version of Easyfig☆99Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Assembly statistic visualisation☆90Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago