medical-genomics-group / gmrm
A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
☆9Updated last year
Related projects ⓘ
Alternatives and complementary repositories for gmrm
- ☆22Updated this week
- Liftover VCF files☆16Updated 7 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆23Updated last month
- Evaluation of phasing performance☆21Updated 6 years ago
- Long RNA-seq analysis workflow☆14Updated last week
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆13Updated last month
- Sweep Inference Framework (controlling for correlation)☆28Updated 4 months ago
- ☆27Updated last year
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago
- Large scale ancestry inference from PCA data☆21Updated last year
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆13Updated 3 years ago
- ☆20Updated 7 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆19Updated 6 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆21Updated 2 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆26Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- Generalized linear Mixed Model Association Tests☆36Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- UCSC liftOver (genome build converter) for vcf format☆12Updated 6 years ago
- ☆23Updated 2 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 5 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year