kaustubhad / fastmanLinks
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
☆39Updated 9 months ago
Alternatives and similar repositories for fastman
Users that are interested in fastman are comparing it to the libraries listed below
Sorting:
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆49Updated 6 months ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated 3 weeks ago
- Pan-transcriptomic phenotyping☆18Updated 2 weeks ago
- Generalized linear Mixed Model Association Tests☆44Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Query the gene models of a given organism/assembly☆27Updated last month
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- R package wrapping bedtools☆43Updated 6 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆32Updated 3 months ago
- Manhattan++☆28Updated last year
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 7 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- An R for fast and flexible DNA methylation analysis☆33Updated 2 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆62Updated 3 years ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- ☆30Updated 4 years ago
- ☆38Updated 4 years ago
- Non-parametric, asymptotic P-value computation for multivariate linear models☆15Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- ☆16Updated 4 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆24Updated 10 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago