Alternatives and similar repositories for panacus:

Users that are interested in panacus are comparing it to the libraries listed below

• daewoooo / SVbyEye
  ☆76Updated 4 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆54Updated 2 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆96Updated 3 weeks ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆122Updated this week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆100Updated this week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆73Updated 2 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆109Updated 2 months ago
• kjenike / panagram
  ☆61Updated this week
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 3 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆47Updated 8 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆77Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated 2 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆92Updated this week
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆75Updated 8 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆86Updated 10 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆99Updated 3 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated last month
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆93Updated last month
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆73Updated 3 years ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆111Updated 8 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆77Updated 2 weeks ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆85Updated 6 months ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆65Updated 2 years ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆39Updated 3 months ago