marschall-lab / panacus
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
☆100Updated last month
Alternatives and similar repositories for panacus:
Users that are interested in panacus are comparing it to the libraries listed below
- ☆88Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- ☆61Updated last month
- Pangenome-based genome inference☆128Updated last week
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- A program for assessing the T2T genome continuity☆71Updated last week
- A list of software for pangenomics☆111Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆6Updated 2 months ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 3 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated last month
- Simple pileup-based variant caller☆89Updated last week
- Phased assembly variant caller☆112Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- High-precision TE Annotator☆114Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated last week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆79Updated 5 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 2 months ago
- PacBio BAM toolkit☆43Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆50Updated last year
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆49Updated last week
- Evaluating genome assemblies☆88Updated last month
- ☆43Updated 8 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆59Updated 3 months ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated last month
- Structural Variant Identification Method using Genome Assemblies☆111Updated 2 years ago