marschall-lab / panacus
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
☆85Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for panacus
- ☆69Updated last month
- Pipeline to convert a haploid assembly into diploid☆90Updated 5 months ago
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆67Updated last month
- ☆57Updated 3 weeks ago
- Pangenome-based genome inference☆111Updated this week
- A list of software for pangenomics☆85Updated 2 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆70Updated last week
- Simple pileup-based variant caller☆81Updated 7 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated 3 weeks ago
- A organelle de novo genome assembly toolkit☆43Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆76Updated last week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Identification of transposable element families from pangenome polymorphisms☆39Updated 2 months ago
- Predict 5mC in PacBio HiFi reads☆32Updated last week
- Phased assembly variant caller☆97Updated 2 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated last month
- Annotation helper tool for the manual curation of transposable element consensus sequences☆44Updated 5 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆96Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- A tool for evaluate long-read de novo assembly results☆41Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆55Updated last month
- PGR-TK: Pangenome Research Tool Kit☆93Updated 6 months ago
- ☆109Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆105Updated last month
- ☆42Updated 7 years ago
- TGS scaffolding☆45Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago