sakoho81 / miplibView external linksLinks
A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
☆88Aug 29, 2025Updated 5 months ago
Alternatives and similar repositories for miplib
Users that are interested in miplib are comparing it to the libraries listed below
Sorting:
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 4 years ago
- Codes for 3D Deconvolution of Microscopy Images☆26Mar 19, 2018Updated 7 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Feb 2, 2026Updated last week
- Musical for ImageJ☆11Jul 18, 2023Updated 2 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- Noise Correction Algorithm for sCMOS cameras☆28Jan 15, 2020Updated 6 years ago
- Image restoration for fluorescence microscopy☆326Dec 8, 2025Updated 2 months ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- Adaptive Optics plugin for MicroManager☆12May 23, 2022Updated 3 years ago
- CUDA-accelerated reconstruction for 3D-structured-illumination☆12Nov 24, 2025Updated 2 months ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 5 years ago
- Lattice light-sheet post-processing utility.☆30Feb 2, 2026Updated last week
- A general illumination correction method for optical microscopy.☆42Aug 2, 2021Updated 4 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 10 months ago
- ☆23Mar 26, 2021Updated 4 years ago
- SIMcheck: ImageJ tools for assessing Structured Illumination Microscopy (SIM) data quality and reliability☆29Jan 27, 2021Updated 5 years ago
- A convex 3D deconvolution algorithm for low photon count fluorescence imaging☆33Feb 9, 2022Updated 4 years ago
- python functions for simulating optical transfer functions☆81Apr 8, 2024Updated last year
- 1d plotting in napari-based canvas.☆25Updated this week
- ☆15Feb 5, 2025Updated last year
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Oct 28, 2025Updated 3 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Mar 12, 2025Updated 11 months ago
- A template repo used to make new napari plugins☆31Feb 1, 2026Updated last week
- Drift estimation☆16Oct 4, 2023Updated 2 years ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆17Feb 6, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 2 months ago
- ☆68Apr 23, 2021Updated 4 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago
- Java (ImageJ/Fiji) software package for 3D deconvolution microscopy☆63Mar 9, 2019Updated 6 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 10 months ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆16Jul 16, 2019Updated 6 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 4 months ago
- Image Deconvolution via Noise-Tolerant Self-Supervised Inversion☆30Sep 30, 2024Updated last year