markowetzlab / slidlLinks
A Python library of pre- and post-processing tools for applying deep learning to whole-slide images
β21Updated 2 years ago
Alternatives and similar repositories for slidl
Users that are interested in slidl are comparing it to the libraries listed below
Sorting:
- π¬ Code-free deep segmentation for computational pathologyβ56Updated last year
- An open-source digital pathology based rapid image annotation toolβ88Updated 2 weeks ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflowβ14Updated 4 years ago
- A Python library for deep learning on whole-slide imagesβ53Updated 4 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotationsβ41Updated 3 months ago
- β24Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineeringβ109Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep β¦β38Updated 4 years ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021β22Updated 4 years ago
- A pipeline to segment tissue from the background in histological imagesβ71Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifactsβ38Updated last year
- β‘ Open-source software for deep learning-based digital pathologyβ139Updated last year
- Hibou: Foundational Models for Pathologyβ75Updated last year
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application bringsβ¦β32Updated 3 years ago
- Python 3 library for the augmentation & normalization of H&E imagesβ61Updated 3 years ago
- β72Updated last week
- Benchmarking toolkit for patch-based histopathology image classification.β43Updated 2 years ago
- Pan-cancer tils analysis study by Hongming Xuβ14Updated 5 years ago
- Framework for registration of sequential digitized histology slicesβ28Updated 3 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learnβ¦β24Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytoplaβ¦β30Updated 4 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.β131Updated this week
- π₯ π Blazingly fast pipeline for patch-based classification in whole slide imagesβ84Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β26Updated this week
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissuesβ32Updated 10 months ago
- A Girder plugin for pathology image annotations and analysis.β77Updated this week
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.β23Updated 5 years ago
- a toolbox for manipulation of digital pathology slides and annotationsβ19Updated 5 years ago
- A tool for training machine-learning models with whole-slide imaging datasetsβ26Updated last year
- Intelligent data partitioning using quality control metricsβ19Updated 5 months ago