markowetzlab / slidl
A Python library of pre- and post-processing tools for applying deep learning to whole-slide images
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for slidl
- An open-source digital pathology based rapid image annotation tool☆74Updated this week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆22Updated 2 months ago
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- Benchmarking toolkit for patch-based histopathology image classification.☆37Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆33Updated last week
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 3 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆100Updated last year
- A vision language model for gigapixel whole slide images in histopathology☆27Updated 2 months ago
- Solid Tumor Associative Modeling in Pathology☆47Updated 2 months ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆29Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆52Updated 5 months ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆28Updated 2 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆29Updated 3 years ago
- A Python library for deep learning on whole-slide images☆50Updated 3 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆59Updated 4 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆93Updated this week
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Inference code for HoVer-NeXt☆22Updated 2 months ago
- Stain normalization tools for histological analysis and computational pathology☆118Updated 7 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆28Updated 10 months ago
- ☆21Updated last year
- A pipeline to segment tissue from the background in histological images☆66Updated last year
- Intelligent data partitioning using quality control metrics☆16Updated last week
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆27Updated 2 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆27Updated 6 months ago
- Preprocessing module for large histological images☆18Updated last year
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 3 years ago
- Histopathology Image Analysis☆91Updated last year
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆23Updated last year
- Pipeline for computational pathology☆34Updated 10 months ago