markowetzlab / slidlLinks
A Python library of pre- and post-processing tools for applying deep learning to whole-slide images
☆21Updated 2 years ago
Alternatives and similar repositories for slidl
Users that are interested in slidl are comparing it to the libraries listed below
Sorting:
- An open-source digital pathology based rapid image annotation tool☆87Updated last week
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- A Python library for deep learning on whole-slide images☆53Updated 4 years ago
- Python 3 library for the augmentation & normalization of H&E images☆61Updated 3 years ago
- ☆24Updated 2 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Updated 4 years ago
- Hibou: Foundational Models for Pathology☆74Updated last year
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Updated 5 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆139Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆26Updated 4 months ago
- Benchmarking toolkit for patch-based histopathology image classification.☆42Updated 2 years ago
- Preprocessing module for large histological images☆21Updated 2 years ago
- Intelligent data partitioning using quality control metrics☆19Updated 5 months ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Updated 4 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 5 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆38Updated 4 years ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆31Updated 3 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆40Updated 2 months ago
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆36Updated last year
- A Girder plugin for pathology image annotations and analysis.☆76Updated last month