markowetzlab / pathml-tutorialLinks
A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learning" by Berman et al.
☆24Updated 3 years ago
Alternatives and similar repositories for pathml-tutorial
Users that are interested in pathml-tutorial are comparing it to the libraries listed below
Sorting:
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago
- Pipeline for computational pathology☆37Updated 2 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆66Updated last year
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Updated 5 years ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- ☆20Updated 3 years ago
- Code from Foersch et al. (Under Construction / Development)☆38Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- ☆46Updated 4 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆71Updated 3 years ago
- ☆57Updated 4 years ago
- ☆50Updated 3 years ago
- ☆46Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆109Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated 2 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆79Updated 11 months ago
- A set of codes to classify H&E slides using deep learning☆29Updated 3 years ago
- ☆15Updated 11 months ago
- Image-to-Image Translation in PyTorch☆24Updated 2 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- A pipeline to segment tissue from the background in histological images☆72Updated 2 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 5 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆76Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- Re-stained whole slide image alignment☆36Updated 2 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 11 months ago
- Pretrained model for self supervised histopathology☆122Updated 3 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 6 years ago