markowetzlab / pathml-tutorialLinks
A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learning" by Berman et al.
☆24Updated 3 years ago
Alternatives and similar repositories for pathml-tutorial
Users that are interested in pathml-tutorial are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- Pipeline for computational pathology☆35Updated last year
- Code from Foersch et al. (Under Construction / Development)☆36Updated last year
- Histopathology Image Analysis☆92Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated 2 years ago
- ☆20Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆56Updated 2 years ago
- Data and code to accompany our Nature publication☆46Updated 3 years ago
- ☆55Updated 3 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 3 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆29Updated last year
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆19Updated 11 months ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- ☆35Updated 2 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆25Updated 3 years ago
- Re-stained whole slide image alignment☆33Updated last year
- A pipeline to segment tissue from the background in histological images☆69Updated 2 years ago
- ☆48Updated 3 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago
- ☆61Updated 9 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- Scripts for data processing☆43Updated last year
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for training☆26Updated last year
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆19Updated 3 weeks ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆49Updated 3 months ago
- ☆40Updated 3 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆90Updated 6 months ago