markowetzlab / pathml-tutorialLinks
A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learning" by Berman et al.
☆24Updated 3 years ago
Alternatives and similar repositories for pathml-tutorial
Users that are interested in pathml-tutorial are comparing it to the libraries listed below
Sorting:
- A Python library for deep learning on whole-slide images☆53Updated 4 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆109Updated 2 years ago
- Histopathology Image Analysis☆93Updated 2 years ago
- Pipeline for computational pathology☆38Updated last year
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- ☆20Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆70Updated 3 years ago
- ☆46Updated 2 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 5 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- Python 3 library for the augmentation & normalization of H&E images☆61Updated 3 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆37Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Code from Foersch et al. (Under Construction / Development)☆37Updated 2 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆74Updated 10 months ago
- ☆57Updated 3 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆34Updated 3 years ago
- ☆49Updated 3 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 6 years ago
- ☆66Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆21Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images☆20Updated last year
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆177Updated 4 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- Deep Learning-based Frozen Section to FFPE Translation☆66Updated last year
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago