A pipeline to segment tissue from the background in histological images
☆72Apr 2, 2023Updated 2 years ago
Alternatives and similar repositories for PyHIST
Users that are interested in PyHIST are comparing it to the libraries listed below
Sorting:
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Jun 20, 2023Updated 2 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆95Jan 15, 2020Updated 6 years ago
- Library for Digital Pathology Image Processing☆443Mar 2, 2026Updated last week
- ☆46Jan 10, 2022Updated 4 years ago
- Benchmarking toolkit for patch-based histopathology image classification.☆43Jun 2, 2023Updated 2 years ago
- ☆16Jan 18, 2023Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆32May 3, 2021Updated 4 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29May 21, 2024Updated last year
- Powerful, open-source AI tools for digital pathology.☆353Nov 13, 2025Updated 3 months ago
- ☆350Mar 29, 2025Updated 11 months ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆177Nov 13, 2025Updated 3 months ago
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆54Feb 2, 2024Updated 2 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Open source tools for computational pathology - Nature BME☆1,617Apr 14, 2025Updated 10 months ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆690Oct 27, 2023Updated 2 years ago
- Instance-based Vision Transformer for Subtyping of Papillary Renal Cell Carcinoma in Histopathological Image-MICCAI 2021☆15Dec 26, 2023Updated 2 years ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Aug 17, 2021Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆76Feb 20, 2026Updated 2 weeks ago
- ☆22Apr 16, 2022Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆102Jul 1, 2019Updated 6 years ago
- Dataset: landmarks for registration of histology images☆34Jan 9, 2021Updated 5 years ago
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆457Apr 29, 2024Updated last year
- IHC-image analysis workflow☆23May 29, 2018Updated 7 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆143Jun 9, 2022Updated 3 years ago
- The Colour Deconvolution 2 ImageJ plugin implements stain unmixing with Ruifrok and Johnston’s method described in [Ruifrok AC, Johnston …☆12Aug 5, 2022Updated 3 years ago
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- The code for Kernel attention transformer (KAT)☆35Jun 13, 2024Updated last year
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 4 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- ☆346Nov 21, 2021Updated 4 years ago
- cGAN-based Multi Organ Nuclei Segmentation☆195Jun 10, 2022Updated 3 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆126Aug 23, 2022Updated 3 years ago
- Histopathology Image Analysis☆93Jul 6, 2023Updated 2 years ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆240Feb 4, 2026Updated last month
- A pan-cancer platform for mutation prediction from routine histology☆68May 23, 2021Updated 4 years ago