Alternatives and similar repositories for NuInsSeg:

Users that are interested in NuInsSeg are comparing it to the libraries listed below

• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆31Updated last month
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆31Updated 2 weeks ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆52Updated 2 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆82Updated 3 months ago
• huangzhii / IMPRESS
  ☆19Updated 2 years ago
• wenqi006 / SlideGraph
  ☆52Updated 3 years ago
• TissueImageAnalytics / CoNIC
  CoNIC Challenge
  ☆63Updated last year
• javadnoorb / HistCNN
  A set of codes to classify H&E slides using deep learning
  ☆30Updated 3 years ago
• cvlab-stonybrook / SAMPath
  Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)
  ☆37Updated 5 months ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆45Updated 2 years ago
• AGFoersch / MultiStainDeepLearning
  Code from Foersch et al. (Under Construction / Development)
  ☆36Updated last year
• marrlab / HistoGPT
  A vision language model for gigapixel whole slide images in histopathology
  ☆38Updated 5 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆66Updated 2 years ago
• AIRMEC / HECTOR
  Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.
  ☆38Updated 3 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• markowetzlab / pathml-tutorial
  A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…
  ☆22Updated 3 years ago
• Mr-TalhaIlyas / Prerpcessing-PanNuke-Nuclei-Instance-Segmentation-Dataset
  ☆34Updated 2 years ago
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆31Updated 2 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆52Updated 2 years ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆89Updated last month
• KatherLab / preProcessing
  ☆42Updated last year
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆29Updated 10 months ago
• QuIIL / Sonnet
  SONNET: A self-guided ordinal regression neural network for segmentation and classification of nuclei in large-scale multi-tissue histolo…
  ☆17Updated 3 years ago
• trislaz / gigassl
  Repository for the Giga-SSL paper
  ☆21Updated 5 months ago
• nauyan / NucleiSegmentation
  The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.
  ☆30Updated 2 years ago
• mahmoodlab / multimodal-cancer-origin-prediction
  Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction
  ☆25Updated last year
• AIRMEC / im4MEC
  Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…
  ☆42Updated last year
• KatherLab / cancer-metadata
  machine-readable information for the TCGA dataset, mirrored from other sources
  ☆17Updated 2 years ago
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆30Updated last month