Benchmarking toolkit for patch-based histopathology image classification.
β43Jun 2, 2023Updated 3 years ago
Alternatives and similar repositories for champkit
Users that are interested in champkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HIPPO π¦ is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing oβ¦β19Jan 15, 2025Updated last year
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide imagesβ22Jan 16, 2023Updated 3 years ago
- Histopathology Image Analysisβ94Jul 6, 2023Updated 2 years ago
- Efficient subtyping of ovarian cancer histopathology whole slide images using active sampling in multiple instance learningβ10Mar 19, 2024Updated 2 years ago
- π₯ π Blazingly fast pipeline for patch-based classification in whole slide imagesβ85Jul 11, 2024Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.β29May 21, 2024Updated 2 years ago
- β13Apr 28, 2024Updated 2 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)β143Jun 9, 2022Updated 4 years ago
- Instance-based Vision Transformer for Subtyping of Papillary Renal Cell Carcinoma in Histopathological Image-MICCAI 2021β15Dec 26, 2023Updated 2 years ago
- [npj Digital Medicine'24] Aligning Knowledge Concepts to Whole Slide Images for Precise Histopathology Image Analysisβ36Jan 7, 2025Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sourcesβ23Jun 14, 2022Updated 4 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computβ¦β270Dec 23, 2023Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E imagesβ66Sep 12, 2022Updated 3 years ago
- β57Jan 18, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.β27Feb 23, 2024Updated 2 years ago
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.β11Oct 11, 2020Updated 5 years ago
- End-to-end pipeline to go from raw H&E slides to normalised extracted features for trainingβ28Mar 20, 2024Updated 2 years ago
- The official repo of "A Multimodal Knowledge-enhanced Whole-slide Pathology Foundation Model"β50May 1, 2026Updated last month
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Medβ¦β170Jan 29, 2024Updated 2 years ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.β23Dec 5, 2025Updated 6 months ago
- β46Jan 10, 2022Updated 4 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quβ¦β81Feb 4, 2025Updated last year
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)β621Mar 19, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- β20Jul 15, 2022Updated 3 years ago
- Repository for "Gigapixel Whole-Slide Images Classification using Locally Supervised Learning" (MICCAI 2022)β28Sep 26, 2022Updated 3 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"β18Aug 17, 2024Updated last year
- [NeurIPS 2025] Few-Shot Learning from Gigapixel Images via Hierarchical Vision-Language Alignment and Modelingβ26May 20, 2026Updated 3 weeks ago
- A pipeline to segment tissue from the background in histological imagesβ72Apr 2, 2023Updated 3 years ago
- Hibou: Foundational Models for Pathologyβ78Oct 23, 2024Updated last year
- A Comprehensive Evaluation of Histopathology Foundation Models for Ovarian Cancer Subtype Classificationβ16Jan 31, 2025Updated last year
- Encoder-Decoder Cell and Nuclei segmentation modelsβ103Nov 14, 2025Updated 7 months ago
- Training foundational medical imaging models using multi-task learning.β56May 7, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for preparing and running the imageCCA method.β20Aug 2, 2017Updated 8 years ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cellβ244Feb 7, 2023Updated 3 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasksβ25Sep 8, 2023Updated 2 years ago
- An open-source digital pathology based rapid image annotation toolβ90May 21, 2026Updated 3 weeks ago
- SI-MILβ35Jan 3, 2025Updated last year
- Pytorch dataloader and pytorch lightning datamodule for Earth Observation imageryβ15Apr 7, 2022Updated 4 years ago
- Graph + Image Bimodal Deep Learning for Histology Image Classificationβ19Mar 15, 2023Updated 3 years ago