SBU-BMI / champkitLinks
Benchmarking toolkit for patch-based histopathology image classification.
☆41Updated 2 years ago
Alternatives and similar repositories for champkit
Users that are interested in champkit are comparing it to the libraries listed below
Sorting:
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆107Updated 2 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆88Updated 2 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆140Updated 3 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆55Updated 2 years ago
- ☆44Updated 2 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- Histopathology Slides Preprocessing Pipeline☆40Updated 4 months ago
- Hibou: Foundational Models for Pathology☆73Updated 8 months ago
- Python 3 library for the augmentation & normalization of H&E images☆57Updated 2 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆22Updated last year
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Updated 10 months ago
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- Repository for "Gigapixel Whole-Slide Images Classification using Locally Supervised Learning" (MICCAI 2022)☆28Updated 2 years ago
- ☆62Updated 9 months ago
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆57Updated 4 months ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Updated 3 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 7 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- ☆45Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆147Updated 6 months ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Training/Evaluation code for HoVer-NeXt☆14Updated 6 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆34Updated last year
- ☆40Updated 3 years ago
- A graph-transformer for whole slide image classification☆167Updated last year
- ☆71Updated 4 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆91Updated 7 months ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30Updated last year