DIAGNijmegen / pathology-whole-slide-dataView external linksLinks
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
☆110Nov 8, 2025Updated 3 months ago
Alternatives and similar repositories for pathology-whole-slide-data
Users that are interested in pathology-whole-slide-data are comparing it to the libraries listed below
Sorting:
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆265Dec 23, 2023Updated 2 years ago
- ☆68Sep 23, 2024Updated last year
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆504Updated this week
- CoNIC Challenge☆69Feb 19, 2024Updated last year
- Powerful, open-source AI tools for digital pathology.☆351Nov 13, 2025Updated 3 months ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆613Mar 19, 2024Updated last year
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Jan 9, 2023Updated 3 years ago
- ☆32Nov 26, 2024Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Jun 20, 2023Updated 2 years ago
- Histopathology Image Analysis☆93Jul 6, 2023Updated 2 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- Library for Digital Pathology Image Processing☆439Feb 9, 2026Updated last week
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 3 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Jan 25, 2024Updated 2 years ago
- Tools for computational pathology☆441Oct 24, 2025Updated 3 months ago
- A Python toolkit for pathology image analysis algorithms.☆465Jan 12, 2026Updated last month
- The official deployment of the Digital Slide Archive and HistomicsTK.☆133Updated this week
- Pipeline for computational pathology☆37Jan 4, 2024Updated 2 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆175Apr 1, 2022Updated 3 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Aug 7, 2025Updated 6 months ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆161May 14, 2024Updated last year
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆16Jun 15, 2023Updated 2 years ago
- Codes available of a paper: An Efficient Cervical Whole Slide Image Analysis Framework Based on Multi-scale Semantic and Location Deep Fe…☆16Jul 26, 2022Updated 3 years ago
- ☆15Jul 8, 2024Updated last year
- Stain normalization tools for histological analysis and computational pathology☆175Nov 13, 2025Updated 3 months ago
- List of pathology feature extractors and foundation models☆167Feb 9, 2026Updated last week
- HistoQC is an open-source quality control tool for digital pathology slides☆317Dec 10, 2025Updated 2 months ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- Open source tools for computational pathology - Nature BME☆1,607Apr 14, 2025Updated 10 months ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆663Sep 12, 2023Updated 2 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Feb 8, 2022Updated 4 years ago
- ☆20Dec 20, 2022Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Apr 4, 2022Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- Hibou: Foundational Models for Pathology☆76Oct 23, 2024Updated last year
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆462May 3, 2024Updated last year
- ☆188Jul 23, 2025Updated 6 months ago
- ☆346Nov 21, 2021Updated 4 years ago
- Solid Tumor Associative Modeling in Pathology☆110Updated this week