DIAGNijmegen / pathology-whole-slide-dataLinks
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
☆102Updated 7 months ago
Alternatives and similar repositories for pathology-whole-slide-data
Users that are interested in pathology-whole-slide-data are comparing it to the libraries listed below
Sorting:
- Histopathology Image Analysis☆92Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated 2 years ago
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆148Updated last year
- Pretrained model for self supervised histopathology☆116Updated 2 years ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆53Updated 6 months ago
- Stain normalization tools for histological analysis and computational pathology☆145Updated 5 months ago
- ☆35Updated 2 years ago
- Some stain normalization code☆89Updated 2 years ago
- Tools to build deep learning pipelines.☆103Updated 7 months ago
- ☆55Updated 3 years ago
- ☆61Updated 9 months ago
- ☆42Updated 7 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆55Updated last year
- List of pathology feature extractors and foundation models☆131Updated 2 weeks ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆66Updated 4 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆80Updated last year
- Standardized benchmark for computational pathology foundation models.☆83Updated this week
- Pipeline for computational pathology☆35Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆33Updated last year
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- Interpretable Gland-Graph Networks☆21Updated last year
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆29Updated last year
- Histopathology Slides Preprocessing Pipeline☆38Updated 3 months ago
- ☆35Updated 3 months ago
- A pipeline to segment tissue from the background in histological images☆69Updated 2 years ago
- StainNet: a fast and robust stain normalization network☆47Updated 3 years ago
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated this week
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30Updated last year
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated last month