DIAGNijmegen / pathology-whole-slide-dataLinks
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
☆107Updated last week
Alternatives and similar repositories for pathology-whole-slide-data
Users that are interested in pathology-whole-slide-data are comparing it to the libraries listed below
Sorting:
- Histopathology Image Analysis☆92Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆159Updated 2 weeks ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Pipeline for computational pathology☆38Updated last year
- ☆57Updated 3 years ago
- ☆66Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆84Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆98Updated last week
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆157Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated last year
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆106Updated 3 months ago
- GPU-accelerated stain normalization command line tool☆23Updated 2 years ago
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- Tools to build deep learning pipelines.☆110Updated last year
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆56Updated 11 months ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆261Updated last year
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago
- Histopathology Slides Preprocessing Pipeline☆42Updated 8 months ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆32Updated last year
- ☆27Updated 11 months ago
- Interpretable Gland-Graph Networks☆22Updated last year
- List of pathology feature extractors and foundation models☆155Updated 5 months ago
- ☆37Updated 2 years ago
- Awesome List of Digital and Computational Pathology Resources☆88Updated 10 months ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆74Updated 9 months ago
- Python 3 library for the augmentation & normalization of H&E images☆61Updated 3 years ago
- Virtual Alignment of pathoLogy Image Series☆189Updated 4 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago