serrob23 / falsecolorLinks
FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytoplasmic stain) to the traditional H&E histopathology color space.
☆30Updated 4 years ago
Alternatives and similar repositories for falsecolor
Users that are interested in falsecolor are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆90Updated last year
- Piecewise alignment for layers of mosaics☆28Updated last month
- ☆71Updated last month
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 6 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- Transfer trained StarDist models across imaging modalities☆3Updated 10 months ago
- QuPath extension to interactively align images☆24Updated last month
- An open-source digital pathology based rapid image annotation tool☆81Updated last week
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- QuPath extension to run StarDist nucleus detection☆43Updated last month
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆59Updated 2 months ago
- ☆26Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 7 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- ☆32Updated last week
- Raw format to OME-TIFF converter☆55Updated this week
- QuPath extension for Cellsparse☆19Updated 3 months ago
- version 1 scripts for CODA☆50Updated last year
- ☆34Updated last year
- QuPath extension for Segment Anything Model (SAM)☆114Updated 2 weeks ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆17Updated this week
- GrandQC tool for tissue detection and quality control in pathology☆57Updated 5 months ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆125Updated this week
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated last month
- The official QuPath extension for InstanSeg☆24Updated 3 weeks ago
- 🔬 Code-free deep segmentation for computational pathology☆55Updated last year
- CODEX data processing code☆12Updated last month