Alternatives and similar repositories for hibou

Users that are interested in hibou are comparing it to the libraries listed below

• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆39Updated 6 months ago
• marrlab / HistoGPT
  A vision language model for gigapixel whole slide images in histopathology
  ☆75Updated last month
• TIO-IKIM / CellViT-plus-plus
  ☆149Updated 2 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆106Updated 8 months ago
• digitalpathologybern / hover_next_train
  Training/Evaluation code for HoVer-NeXt
  ☆14Updated 9 months ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆87Updated this week
• mahmoodlab / MADELEINE
  MADELEINE: multi-stain slide representation learning (ECCV'24)
  ☆62Updated 7 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆80Updated last year
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆61Updated 3 years ago
• SBU-BMI / champkit
  Benchmarking toolkit for patch-based histopathology image classification.
  ☆42Updated 2 years ago
• kaiko-ai / towards_large_pathology_fms
  This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: fr…
  ☆34Updated 8 months ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆102Updated 2 months ago
• clemsgrs / hs2p
  Histopathology Slides Preprocessing Pipeline
  ☆42Updated 6 months ago
• georg-wolflein / good-features
  Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"
  ☆18Updated last year
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆66Updated 7 months ago
• mahmoodlab / TANGLE
  Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆108Updated 11 months ago
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆34Updated last year
• sinai-computational-pathology / CPath_SABenchmark
  ☆14Updated last year
• owkin / HistoSSLscaling
  Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…
  ☆158Updated last year
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆96Updated 7 months ago
• huangzhii / nuclei.io
  nuclei.io: Human-in-the-loop active learning framework for pathology image analysis
  ☆80Updated 4 months ago
• KatherLab / EAGLE
  Efficient Approach for Guided Local Examination in Digital Pathology
  ☆27Updated 5 months ago
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆108Updated 2 years ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆106Updated 10 months ago
• mahmoodlab / MIL-Lab
  Feather - Lightweight supervised slide foundation models (ICML 2025)
  ☆93Updated 2 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated last month
• Nellaker-group / happy
  ☆22Updated 2 weeks ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last month
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆153Updated 9 months ago