jakobtroidl / neuron-shape-reasoningLinks
PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers
☆12Updated 5 months ago
Alternatives and similar repositories for neuron-shape-reasoning
Users that are interested in neuron-shape-reasoning are comparing it to the libraries listed below
Sorting:
- Block-wise task scheduling for large nD volumes.☆32Updated 9 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆21Updated 7 months ago
- 🌈☆66Updated 3 months ago
- ☆29Updated last month
- Read and write Neuroglancer datasets programmatically.☆169Updated last week
- 3D/4D volumetric rendering of microscopy data☆26Updated 2 months ago
- Time arrow prediction for live-cell microscopy☆21Updated last year
- ☆39Updated 4 months ago
- Python package for deep learning based image to image transformation☆53Updated last month
- Scalable Optical Flow-based Image Montaging and Alignment☆85Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Updated 3 months ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Updated 6 months ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Updated last month
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆16Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- ☆22Updated 8 months ago
- Block-wise operations for large nD volumes☆43Updated last week
- High quality visualization for volumetric image data☆54Updated this week
- ☆39Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆63Updated last month
- A tutorial of classical shape analysis methods☆11Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated 3 weeks ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆87Updated last week
- Cell tracking and segmentation software☆163Updated last week
- Transformer-based cell tracking for live-cell microscopy☆120Updated 2 weeks ago
- Tools for handling FIB-SEM data and annotations☆22Updated 9 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆112Updated 3 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆22Updated last week