PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers
☆14Mar 16, 2026Updated 7 months ago
Alternatives and similar repositories for neuron-shape-reasoning
Users that are interested in neuron-shape-reasoning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆18Apr 5, 2024Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆34Updated this week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆29Jul 9, 2026Updated 3 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated this week
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Oct 8, 2026Updated last week
- AprilTag message definitions☆15May 22, 2026Updated 4 months ago
- ☆10Jan 22, 2026Updated 8 months ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆24Sep 16, 2026Updated last month
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 8 months ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 4 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆28Jun 15, 2026Updated 4 months ago
- 3D dense segmentation compression codec based on crack codes.☆18Sep 2, 2026Updated last month
- Block-wise operations for large nD volumes☆45Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- Swift Phenotypic Analysis of Cells☆12Jun 8, 2025Updated last year
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆16Nov 7, 2024Updated last year
- Read and write Neuroglancer datasets programmatically.☆176Oct 7, 2026Updated last week
- ☆13Jun 28, 2024Updated 2 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Oct 7, 2026Updated last week
- ☆14May 29, 2024Updated 2 years ago
- DDS function generator (sinus/triangle/TTL) with AD9833 and AD5452☆12Nov 20, 2025Updated 10 months ago
- Mesh generation, skeletonization, voxelization of sparse 3D data.☆26Aug 9, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Aug 3, 2026Updated 2 months ago
- ☆67Oct 8, 2026Updated last week
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 months ago
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆37Jan 3, 2025Updated last year
- multiview and self-supervised learning☆11May 8, 2022Updated 4 years ago
- Python module for lipidomics LC MS/MS data analysis☆22Jun 27, 2024Updated 2 years ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 4 years ago
- Time-stratified f-statistics☆18Aug 1, 2025Updated last year
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆29Feb 24, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- ☆10Jan 5, 2023Updated 3 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Oct 11, 2026Updated last week
- CryoVIT: Efficient Segmentation of Cryo-electron Tomograms with Vision Foundation Models☆12Apr 25, 2026Updated 5 months ago
- ☆12Dec 23, 2020Updated 5 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆18Sep 29, 2026Updated 2 weeks ago