jakobtroidl / neuron-shape-reasoningLinks
PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers
☆12Updated 4 months ago
Alternatives and similar repositories for neuron-shape-reasoning
Users that are interested in neuron-shape-reasoning are comparing it to the libraries listed below
Sorting:
- Block-wise task scheduling for large nD volumes.☆32Updated 8 months ago
- 🌈☆66Updated 2 months ago
- ☆29Updated last week
- MorphoFeatures code and data☆22Updated 2 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆20Updated 6 months ago
- ☆39Updated 3 months ago
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆16Updated last year
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Updated 3 weeks ago
- Scalable Optical Flow-based Image Montaging and Alignment☆83Updated last week
- Read and write Neuroglancer datasets programmatically.☆168Updated this week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆110Updated 2 months ago
- Command line tool for registration of very large 3D volumes.☆15Updated 2 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆62Updated last week
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Updated 5 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Updated 2 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated 2 weeks ago
- ☆45Updated last month
- Python package for deep learning based image to image transformation☆53Updated 3 weeks ago
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆34Updated last month
- ☆13Updated last month
- 3D/4D volumetric rendering of microscopy data☆26Updated last month
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆35Updated this week
- ☆22Updated 7 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Cell tracking and segmentation software☆159Updated last week
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆184Updated this week
- ☆32Updated 4 months ago
- Time arrow prediction for live-cell microscopy☆20Updated last year
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆20Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆19Updated last month