jakobtroidl / neuron-shape-reasoningLinks
PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers
☆12Updated 3 months ago
Alternatives and similar repositories for neuron-shape-reasoning
Users that are interested in neuron-shape-reasoning are comparing it to the libraries listed below
Sorting:
- Block-wise task scheduling for large nD volumes.☆32Updated 7 months ago
 - MorphoFeatures code and data☆22Updated 2 years ago
 - ☆28Updated last month
 - 🌈☆66Updated 3 weeks ago
 - NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆19Updated 5 months ago
 - ☆38Updated 2 months ago
 - Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆13Updated last year
 - Read and write Neuroglancer datasets programmatically.☆160Updated this week
 - A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Updated last month
 - Python package for deep learning based image to image transformation☆53Updated 2 months ago
 - 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 7 months ago
 - Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Updated 4 months ago
 - Time arrow prediction for live-cell microscopy☆19Updated last year
 - Tools to work with the FlyWire connectome. Fully interoperable with navis.☆16Updated last month
 - Multiplatform 3D numpy image browser based viewer with voxel painting.☆15Updated last week
 - A library to facilitate machine learning on multi-dimensional images.☆86Updated 3 weeks ago
 - Command line tool for registration of very large 3D volumes.☆15Updated last year
 - 3D/4D volumetric rendering of microscopy data☆26Updated 3 weeks ago
 - ☆43Updated 3 weeks ago
 - Scalable Optical Flow-based Image Montaging and Alignment☆81Updated this week
 - Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆55Updated last week
 - A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆105Updated 3 weeks ago
 - Cell tracking and segmentation software☆153Updated this week
 - ☆45Updated last week
 - Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 7 months ago
 - PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated this week
 - Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
 - ☆39Updated last year
 - Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last month
 - End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆34Updated 3 weeks ago