The complete sequence of a human genome
☆1,055Jul 3, 2026Updated 2 months ago
Alternatives and similar repositories for CHM13
Users that are interested in CHM13 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete diploid human genome☆158Aug 10, 2026Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆677Jul 20, 2026Updated last month
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- Long read / genome alignment software☆330Dec 16, 2025Updated 8 months ago
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,244May 19, 2026Updated 3 months ago
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆292Aug 21, 2026Updated last week
- ☆139Aug 26, 2026Updated last week
- Read-based phasing of genomic variants, also called haplotype assembly☆428Jul 4, 2026Updated last month
- The next version of bwa-mem☆860Oct 15, 2025Updated 10 months ago
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆873May 2, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆102Apr 22, 2024Updated 2 years ago
- ☆290Dec 29, 2025Updated 8 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆413Aug 25, 2026Updated last week
- Assemblies from HPP Year 1 production☆82May 9, 2023Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆389Updated this week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 3 months ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- Annotation and Ranking of Structural Variation☆311Aug 11, 2026Updated 3 weeks ago
- the pangenome graph builder☆514Jul 24, 2026Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆535Aug 24, 2026Updated last week
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,800Mar 19, 2026Updated 5 months ago
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated 5 months ago
- Data and analysis for NA12878 genome on nanopore☆410Nov 22, 2022Updated 3 years ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 3 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Deep learning framework for SV calling and genotyping☆115Nov 8, 2023Updated 2 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆435Aug 25, 2026Updated last week