The complete sequence of a human genome
☆1,062Jul 3, 2026Updated 2 months ago
Alternatives and similar repositories for CHM13
Users that are interested in CHM13 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete diploid human genome☆160Aug 10, 2026Updated last month
- Structural variation caller using third generation sequencing☆680Sep 10, 2026Updated last week
- Structural variant toolkit for VCFs☆423Updated this week
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,249May 19, 2026Updated 4 months ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆293Aug 21, 2026Updated last month
- ☆142Aug 26, 2026Updated 3 weeks ago
- Read-based phasing of genomic variants, also called haplotype assembly☆430Updated this week
- The next version of bwa-mem☆863Oct 15, 2025Updated 11 months ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆102Apr 22, 2024Updated 2 years ago
- ☆290Dec 29, 2025Updated 8 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆419Aug 25, 2026Updated 3 weeks ago
- Assemblies from HPP Year 1 production☆83May 9, 2023Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆392Sep 15, 2026Updated last week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Sequence-to-graph mapper and graph generator☆489Aug 11, 2025Updated last year
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆814May 31, 2026Updated 3 months ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆291Oct 11, 2024Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 9 months ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated last month
- the pangenome graph builder☆515Jul 24, 2026Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆536Updated this week
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,810Mar 19, 2026Updated 6 months ago
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated 5 months ago
- Data and analysis for NA12878 genome on nanopore☆413Nov 22, 2022Updated 3 years ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 3 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆532Sep 27, 2023Updated 2 years ago
- Deep learning framework for SV calling and genotyping☆116Nov 8, 2023Updated 2 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆436Sep 2, 2026Updated 3 weeks ago