marbl / CHM13Links
The complete sequence of a human genome
☆1,014Updated 6 months ago
Alternatives and similar repositories for CHM13
Users that are interested in CHM13 are comparing it to the libraries listed below
Sorting:
- Scripts to download genomes from the NCBI FTP servers☆1,059Updated 6 months ago
- A quality control analysis tool for high throughput sequencing data☆572Updated 3 weeks ago
- A fast and sensitive gapped read aligner☆768Updated this week
- The second version of the Kraken taxonomic sequence classification system☆864Updated this week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆525Updated 3 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,043Updated this week
- SPAdes Genome Assembler☆902Updated last week
- Oxford Nanopore's Basecaller☆785Updated 2 weeks ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆714Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆523Updated this week
- The next version of bwa-mem☆810Updated 3 months ago
- A single molecule sequence assembler for genomes large and small.☆696Updated 2 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆695Updated 2 months ago
- SRA Tools☆1,294Updated last week
- Phylogenetic orthology inference for comparative genomics☆827Updated 6 months ago
- Rapid prokaryotic genome annotation☆952Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆862Updated last year
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆839Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated last week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆886Updated last month
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆549Updated 8 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆895Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆721Updated 10 months ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆679Updated 6 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,020Updated 10 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆856Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,116Updated last month
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆877Updated 2 weeks ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,190Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆556Updated 2 weeks ago