maiziex / Aquila_stLFRLinks
Human haplotype-resolved assembly and variant detection for stLFR, hybrid assembly for linked-reads
☆8Updated 4 months ago
Alternatives and similar repositories for Aquila_stLFR
Users that are interested in Aquila_stLFR are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- SV genotyping with long reads☆39Updated last year
- ☆34Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆48Updated last year
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last month
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- ☆31Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆30Updated 5 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- ☆34Updated 5 years ago
- ☆22Updated 4 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- ☆29Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆11Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 weeks ago
- toolkit to process gtf files☆17Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago