mpertea / stringtie2-initial-release
Transcript assembly and quantification for RNA-Seq
☆8Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for stringtie2-initial-release
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- ☆30Updated 2 weeks ago
- SV genotyping with long reads☆40Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆27Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- A gene fusion caller for long-read transcriptome sequencing data.☆16Updated 6 months ago
- A tool to detect structural variant☆18Updated last year
- ☆24Updated last month
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Improved Phased Assembler☆28Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- SV calling for diploid assemblies☆23Updated 8 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago