Alternatives and similar repositories for oncoPredict:

Users that are interested in oncoPredict are comparing it to the libraries listed below

• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• xiayh17 / RNAseqStat2
  ☆16Updated last year
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆35Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆27Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• miccec / yaGST
  ☆13Updated 7 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆13Updated 3 weeks ago
• HuangLabUMN / oncoPredict
  An R package for drug response prediction and drug-gene association prediction.
  ☆18Updated last year
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆18Updated 4 months ago
• molgenis / scRNA-seq
  ☆18Updated last year
• jinworks / scAB
  scAB detects multiresolution cell states with clinical significance
  ☆16Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆36Updated 2 years ago
• califano-lab / single-cell-pipeline
  ☆46Updated 5 years ago
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆14Updated 4 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last year
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 4 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 4 months ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆28Updated 2 years ago
• kevlitchfield1 / CPI1000_paper
  ☆20Updated 4 years ago
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆16Updated last year
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 6 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆31Updated 10 months ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆25Updated 2 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆55Updated 5 months ago