maese005 / oncoPredict

Related projects ⓘ

Alternatives and complementary repositories for oncoPredict

• xiayh17 / RNAseqStat2
  ☆16Updated last year
• molgenis / scRNA-seq
  ☆18Updated 8 months ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆16Updated 5 years ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 3 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆27Updated last year
• chensujun / scRNA
  ☆29Updated 3 years ago
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆20Updated 5 months ago
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆15Updated 6 months ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆28Updated 5 months ago
• zgyaru / anti-PD1_ESCC
  ☆15Updated last year
• jinworks / scAB
  scAB detects multiresolution cell states with clinical significance
  ☆14Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆35Updated last year
• horsedayday / eQTLsingle
  ☆13Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆14Updated last year
• califano-lab / single-cell-pipeline
  ☆42Updated 4 years ago
• PaulingLiu / metaICB
  ☆22Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated last year
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆13Updated last year
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆21Updated last year
• Xiaxy-XuLab / PanCAF
  ☆34Updated 2 years ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆23Updated 2 years ago
• HuangLabUMN / oncoPredict
  An R package for drug response prediction and drug-gene association prediction.
  ☆17Updated 7 months ago
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆13Updated 4 years ago
• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆24Updated last year
• yunshun / HumanBreast10X
  ☆23Updated 2 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆48Updated last week
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆28Updated 10 months ago