Alternatives and similar repositories for TMEscore:

Users that are interested in TMEscore are comparing it to the libraries listed below

• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 5 years ago
• yunshun / HumanBreast10X
  ☆25Updated 3 years ago
• miccec / yaGST
  ☆13Updated 7 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• kevlitchfield1 / CPI1000_paper
  ☆21Updated 4 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆28Updated 6 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆30Updated 9 months ago
• zgyaru / anti-PD1_ESCC
  ☆16Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆31Updated 3 years ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆13Updated 3 months ago
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 9 months ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆35Updated 2 years ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• Famingzhao / NEPAL_RawCode
  NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…
  ☆11Updated 11 months ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆21Updated 2 years ago
• HuangLabUMN / oncoPredict
  An R package for drug response prediction and drug-gene association prediction.
  ☆18Updated 11 months ago
• guangchunhan / LUAD_Code
  ☆16Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• DongqiangZeng0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆20Updated 2 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆28Updated 3 weeks ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 3 months ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago