GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.
☆18Jan 3, 2024Updated 2 years ago
Alternatives and similar repositories for GeneBac
Users that are interested in GeneBac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆20Jul 27, 2026Updated last month
- Cellular content mining and particle localization☆10Sep 21, 2025Updated 11 months ago
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated last month
- ☆39Jul 5, 2023Updated 3 years ago
- ☆11Mar 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- ☆35Jan 14, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Mycobacterial pipeline☆11Sep 11, 2025Updated 11 months ago
- A disitributed implementation of alphafold3 base on xfold and tpp-pytorch-extension☆11Mar 26, 2026Updated 5 months ago
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- ☆26Jul 15, 2021Updated 5 years ago
- A lightweight machine learning framework for Xarray☆22Nov 28, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Building Knowledge Graphs from Unstructured Text☆27Apr 15, 2020Updated 6 years ago
- Official Code for the paper: "Composite Feature Selection using Deep Ensembles"☆25Mar 26, 2023Updated 3 years ago
- Cython implementation of PDB -> DataFrame parsing☆34May 23, 2026Updated 3 months ago
- phyloseq R☆12Sep 18, 2019Updated 6 years ago
- ☆26Jan 14, 2025Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 7 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆63Dec 16, 2025Updated 8 months ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- Neural network from scratch in Python using Numpy☆12May 28, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Jul 24, 2026Updated last month
- ☆22Apr 29, 2026Updated 4 months ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- MGKit: Metagenomics Framework☆15Oct 31, 2022Updated 3 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- Hackable AlphaFold 3 inference pipeline.☆35Jun 18, 2025Updated last year
- Identifying transcription factor binding sites from neural network contribution scores☆25Aug 26, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- ☆14Jul 21, 2026Updated last month
- A suite of tools to generate random or mapped fastq files☆22Sep 15, 2022Updated 3 years ago
- ☆19Jul 30, 2022Updated 4 years ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆33Updated this week
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆38Jun 10, 2026Updated 2 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 6 years ago