Lifoof / MoGCNLinks
Multi-omics integration method using AE and GCN
☆39Updated 2 years ago
Alternatives and similar repositories for MoGCN
Users that are interested in MoGCN are comparing it to the libraries listed below
Sorting:
- Deep-Learning framework for multi-omic and survival data integration☆86Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆90Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 11 months ago
- ☆35Updated 3 years ago
- ☆85Updated 5 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆149Updated 3 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 6 months ago
- A deep-learning framework for multi-omics integration☆32Updated 2 years ago
- Pathformer: biological pathway informed transformer model☆37Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆59Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 4 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆66Updated 2 years ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- Tutorials for multimodal omics data analysis☆19Updated 11 months ago
- ☆90Updated 2 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 3 years ago
- ☆30Updated 2 years ago
- ☆56Updated 3 years ago
- ☆90Updated last year
- Python packaging for CPTAC data☆110Updated last year
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆129Updated 3 years ago
- CELLama Project☆23Updated 2 months ago
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago