brentp / slurmpyLinks
submit jobs to slurm with quick-and-dirty python
☆95Updated 2 years ago
Alternatives and similar repositories for slurmpy
Users that are interested in slurmpy are comparing it to the libraries listed below
Sorting:
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆69Updated 3 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 4 years ago
- ☆94Updated 6 years ago
- Tabular seff☆89Updated last month
- HPC Python lesson materials☆61Updated 2 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- A Python class for scheduling SLURM jobs☆60Updated last year
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆84Updated 2 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆43Updated last week
- Deploy Dask on DRMAA clusters☆40Updated 4 years ago
- SLURM Example Scripts☆71Updated last month
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 9 years ago
- IPython magic for SLURM.☆69Updated 5 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- Convert bioinformatics file formats to Zarr☆42Updated 6 months ago
- Deploy Dask on job schedulers like PBS, SLURM, and SGE☆253Updated last month
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- An example GitHub Action (CI) to build a Singularity container☆71Updated 2 years ago
- Cookiecutter for snakemake slurm profile☆134Updated last year
- How to use Singularity!☆68Updated 5 years ago
- The uncompromising Snakemake code formatter☆181Updated last month
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Updated 3 months ago
- Slides and demos from our SciPyConf 2019 talk☆13Updated 4 years ago
- Partial reimplementation of bcftools for VCF Zarr☆19Updated 5 months ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 8 years ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- conda dependency tree helper☆170Updated last week
- Python-interface C++ library for Bayesian phylogenetics via optimization☆39Updated last year