adrianveres / poloLinks
Python Optimal Leaf Ordering for Hierarchical Clustering
☆21Updated 8 years ago
Alternatives and similar repositories for polo
Users that are interested in polo are comparing it to the libraries listed below
Sorting:
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- A library to simulate single-cell data☆2Updated 2 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Find nodes in hierarchical clustering that are statistically significant☆28Updated 7 years ago
- A python library for generating a clustered heatmap with dendrograms.☆32Updated 3 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- ☆12Updated 6 years ago
- ☆36Updated 7 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- ☆10Updated 4 months ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Updated 3 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Python NGS Repository☆9Updated 10 months ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last week
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago