adrianveres / poloLinks
Python Optimal Leaf Ordering for Hierarchical Clustering
☆21Updated 8 years ago
Alternatives and similar repositories for polo
Users that are interested in polo are comparing it to the libraries listed below
Sorting:
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 8 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- ☆10Updated 7 months ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆14Updated 2 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- ☆21Updated 2 years ago
- ☆16Updated 8 months ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆36Updated 8 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 6 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 4 years ago
- ☆12Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- ☆12Updated 6 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 5 years ago