cjprybol / reproducibility-via-singularityLinks
A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
☆26Updated 9 years ago
Alternatives and similar repositories for reproducibility-via-singularity
Users that are interested in reproducibility-via-singularity are comparing it to the libraries listed below
Sorting:
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Updated 8 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆83Updated 5 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆125Updated 2 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- Shape analysis of high-throughput data☆19Updated 9 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 7 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Plos in Computational Biology paper related with github for researchers, code, source and document☆59Updated 9 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated 2 years ago
- Materials for GCB535 at Penn.☆21Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Should you cite this software?☆32Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- ☆45Updated 9 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- ☆11Updated 8 years ago
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs☆69Updated 3 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 8 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated 2 years ago
- GWAS data analysis experiments☆24Updated 5 years ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆39Updated this week
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆21Updated this week
- ☆17Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago