cjprybol / reproducibility-via-singularity
A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
☆26Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for reproducibility-via-singularity
- Plos in Computational Biology paper related with github for researchers, code, source and document☆58Updated 8 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 8 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated 11 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆28Updated 7 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- Shape analysis of high-throughput data☆19Updated 8 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 8 years ago
- Should you cite this software?☆30Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.☆82Updated 3 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 4 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- Materials for GCB535 at Penn.☆20Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 7 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆36Updated 9 months ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- ☆28Updated last year
- Survey of bioinformatics field☆26Updated 12 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- ☆43Updated 8 years ago