Alternatives and similar repositories for reproducibility-via-singularity

Users that are interested in reproducibility-via-singularity are comparing it to the libraries listed below

• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• ryanlayer / ssec2
  Stupid Simple Elastic Compute Cloud
  ☆16Updated last year
• JasonJWilliamsNY / 2018_nih_datascience_rfi
  This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science
  ☆16Updated 7 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• idekerlab / cyREST
  DEPRECATED. Please visit our new repository (cytoscape/cyREST)
  ☆27Updated 8 years ago
• greenelab / continuous_analysis
  Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
  ☆83Updated 4 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• kokrah / HTShape
  Shape analysis of high-throughput data
  ☆19Updated 9 years ago
• PMBio / limix-backup
  ☆45Updated 9 years ago
• Bioconductor / TENxBrainAnalysis
  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
  ☆12Updated 2 years ago
• mr-c / shouldacite
  Should you cite this software?
  ☆32Updated 5 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 8 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 7 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 6 years ago
• leipzig / SandwichesWithSnakemake
  This is a beginner's tutorial to Snakemake
  ☆70Updated 9 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• ejfertig / NSFBiosketch
  R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch
  ☆38Updated 8 years ago
• related-sciences / gwas-analysis
  GWAS data analysis experiments
  ☆24Updated 5 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆125Updated 2 years ago
• widdowquinn / Teaching-Data-Visualisation
  Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)
  ☆15Updated 7 years ago
• singularityhub / singularityhub.github.io
  Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs
  ☆69Updated 3 years ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆17Updated 2 years ago
• datasnakes / beRi
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
  ☆14Updated 6 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 8 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 8 years ago
• ctb / titus-blog
  My blog.
  ☆16Updated 3 months ago
• stephenslab / rss
  RSS: Regression with Summary Statistics
  ☆51Updated last year
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago