lsncibb / microbiomeGWAS

Related projects ⓘ

Alternatives and complementary repositories for microbiomeGWAS

• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 3 weeks ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 6 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated this week
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• xmao / kobas
  KOBAS: a command line tool for identifying significant pathways from genomic data
  ☆30Updated 14 years ago
• xiaolw95 / NetMoss
  ☆14Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆37Updated 2 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆18Updated 7 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆17Updated 6 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• YuLab-SMU / plotting-tree-with-data-using-ggtreeExtra
  ☆24Updated 3 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated last year
• Bioconductor / GenomicFeatures
  Query the gene models of a given organism/assembly
  ☆26Updated 2 weeks ago
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 6 years ago
• jokergoo / KeywordsEnrichment
  ☆31Updated 10 months ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 2 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 weeks ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆29Updated last year
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆33Updated last year
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated this week
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• nf-core / lncpipe
  UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
  ☆33Updated 6 months ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 5 years ago