Alternatives and similar repositories for plotting-tree-with-data-using-ggtreeExtra:

Users that are interested in plotting-tree-with-data-using-ggtreeExtra are comparing it to the libraries listed below

• YongxinLiu / Amplicon2022
  High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis
  ☆15Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last week
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated 2 weeks ago
• hemstrow / snpR
  ☆30Updated last week
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 2 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 11 months ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• GuangchuangYu / plotting_tree_with_data
  Two methods for mapping and visualizing associated data on phylogeny using ggtree
  ☆12Updated 6 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆33Updated 4 years ago
• YongxinLiu / Culturome
  ☆26Updated last year
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆20Updated 9 months ago
• EnvGen / DEGEPRIME
  A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
  ☆30Updated last year
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 3 months ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆36Updated 11 months ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 6 months ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆26Updated 3 weeks ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• rcastelo / atena
  Analysis of transposable elements
  ☆10Updated last week
• ththi / Microbial-Interkingdom-Suppl
  Scripts and data for Duran & Thiergart et al. Cell, 2018
  ☆24Updated 5 years ago
• YuLab-SMU / seqcombo
  Visualization tool for genetic reassortment
  ☆21Updated last week
• GuangchuangYu / cv
  Guangchuang Yu's CV
  ☆44Updated 4 months ago
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 5 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago