pcingola / SnpEffLinks
☆279Updated 4 months ago
Alternatives and similar repositories for SnpEff
Users that are interested in SnpEff are comparing it to the libraries listed below
Sorting:
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆471Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆242Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last month
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Read trimming tool for Illumina NGS data.☆138Updated 10 years ago
- Annotation and Ranking of Structural Variation☆260Updated 3 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆319Updated 3 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆188Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆269Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆229Updated last month
- Documentation for the ANNOVAR software☆242Updated 3 months ago
- BEDOPS: high-performance genomic feature operations☆340Updated last month
- VarDict☆198Updated last year
- Strelka2 germline and somatic small variant caller☆372Updated 3 years ago
- An accurate GFF3/GTF lift over pipeline☆486Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆203Updated 3 weeks ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆369Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated last year
- Full-Length Alternative Isoform analysis of RNA☆229Updated this week
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- TransDecoder source☆291Updated 8 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago