pcingola / SnpEff
☆264Updated last month
Alternatives and similar repositories for SnpEff:
Users that are interested in SnpEff are comparing it to the libraries listed below
- Fast and accurate gene fusion detection from RNA-Seq data☆233Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆266Updated last year
- Count bases in BAM/CRAM files☆314Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆182Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆248Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆309Updated 9 months ago
- Read trimming tool for Illumina NGS data.☆131Updated 10 years ago
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 7 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆198Updated 3 years ago
- VarDict☆194Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆370Updated last year
- Structural variant toolkit for VCFs☆342Updated last week
- Annotation and Ranking of Structural Variation☆243Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆262Updated last year
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆150Updated 2 years ago
- Documentation for the ANNOVAR software☆239Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 2 weeks ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆458Updated last week
- Nextflow training material☆149Updated this week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated 2 weeks ago
- TransDecoder source☆285Updated 5 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆208Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 2 months ago
- Full-Length Alternative Isoform analysis of RNA☆220Updated this week