pcingola / SnpEffLinks
☆302Updated last week
Alternatives and similar repositories for SnpEff
Users that are interested in SnpEff are comparing it to the libraries listed below
Sorting:
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- Documentation for the ANNOVAR software☆245Updated 6 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆160Updated 3 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- BEDOPS: high-performance genomic feature operations☆359Updated 9 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- Full-Length Alternative Isoform analysis of RNA☆246Updated this week
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆331Updated 8 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Updated 3 months ago
- Annotation and Ranking of Structural Variation☆286Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 8 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆353Updated 2 weeks ago
- Strelka2 germline and somatic small variant caller☆389Updated 4 years ago
- Plot structural variant signals from many BAMs and CRAMs☆558Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Updated 5 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆398Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- VarDict☆201Updated 2 years ago
- STAR-Fusion codebase☆248Updated 4 months ago
- TransDecoder source☆299Updated 4 months ago
- A tool for estimating repeat sizes☆205Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆337Updated 3 years ago
- Structural variant and indel caller for mapped sequencing data☆458Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆149Updated 10 years ago
- basic walk-throughs for alignment and variant calling from NGS sequencing data☆218Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago