pcingola / SnpEff
☆263Updated last week
Alternatives and similar repositories for SnpEff:
Users that are interested in SnpEff are comparing it to the libraries listed below
- This Snakemake pipeline implements the GATK best-practices workflow☆247Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆261Updated 2 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆219Updated 4 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆232Updated 3 months ago
- Count bases in BAM/CRAM files☆312Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆538Updated 7 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆192Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆265Updated last year
- A structural variation pipeline for short-read sequencing☆179Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆202Updated 3 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆306Updated 8 months ago
- Documentation for the ANNOVAR software☆238Updated 3 months ago
- VarDict☆192Updated last year
- Annotation and Ranking of Structural Variation☆237Updated last month
- Read trimming tool for Illumina NGS data.☆130Updated 9 years ago
- An accurate GFF3/GTF lift over pipeline☆466Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆211Updated 7 months ago
- STAR-Fusion codebase☆237Updated 2 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆261Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆135Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆369Updated last year
- Structural variant toolkit for VCFs☆339Updated this week
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆218Updated this week
- TransDecoder source☆285Updated 4 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆457Updated last month
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆157Updated 2 weeks ago
- Various algorithms for analysing genomics data☆210Updated this week