pcingola / SnpEffLinks
☆281Updated 5 months ago
Alternatives and similar repositories for SnpEff
Users that are interested in SnpEff are comparing it to the libraries listed below
Sorting:
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆245Updated last week
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated 2 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆237Updated 3 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆255Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆191Updated this week
- Annotation and Ranking of Structural Variation☆262Updated 2 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- BEDOPS: high-performance genomic feature operations☆345Updated 3 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆232Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆477Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Tools for working with genomic and high throughput sequencing data.☆338Updated this week
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆155Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆140Updated 10 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆205Updated 3 weeks ago
- TransDecoder source☆296Updated 10 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆234Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆217Updated 3 weeks ago
- VarDict☆198Updated last year
- Documentation for the ANNOVAR software☆243Updated last week
- basic walk-throughs for alignment and variant calling from NGS sequencing data☆216Updated 6 months ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆196Updated 2 years ago
- Genome browser and variant annotation☆368Updated 2 weeks ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆379Updated last month
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆369Updated last month